Job Description Q46904 Confidence 99.40% Date Thu Jan 5 12:35:41 GMT 2012 Rank 81 Aligned Residues 369 % Identity 13% Template c3p4rM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit; PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate Resolution 3.05 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																											.	50	.	.	.	.	.
Predicted Secondary structure																										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	C	D	I	I	I	I	G	A	G	I	A	G	T	A	C	A	L	R	C	A	R	A	G	.	.	L	S	V	L	L	L	E	R	A	E	I	P	G	S	K	N	L	S	G	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	T	H	A	L	A
Query Conservation																										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	D	L	A	I	V	G	A	G	G	A	G	L	R	A	A	I	A	A	A	Q	A	N	P	N	A	K	I	A	L	I	S	K	V	Y	P	M	R	S	H	T	V	A	A	E	G	G	S	A	A	V	A	Q	D	H	D	S	F	E	Y	H	F	H	D	T	V	A	G	G	D	W	L	C	E	Q	D	V	V	D
Template Known Secondary structure				S							S												T	T		T	T								S	S		G	G	G	S	G	G	G	G			S							S	S	S															T	T		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		E	L	L	P	Q	F	H	L	T	A	P	L	E	R	R	I	T	H	E	S	L	S	L	L	T	P	D	G	V	T	T	F	S	S	L	Q	P	G	G	E	S	W	S	V	.	.	.	.	L	R	A	R	F	D	P	W	L	V	A	E	A	E	K	E	G	V	E	C	I	P	G	A	T	V	D	A	L	Y	E	E
Query Conservation																																														.	.	.	.
Alig confidence																																														.	.	.	.
Template Conservation
Template Sequence		Y	F	V	H	H	C	P	T	E	M	T	Q	L	E	L	W	G	C	P	W	S	R	R	P	D	G	S	V	N	V	R	R	F	G	G	M	K	I	E	R	T	W	F	A	A	D	K	T	G	F	H	M	L	H	T	L	F	Q	T	S	L	Q	F	P	Q	I	Q	R	F	D	E	H	F	V	L	D	I	L	V	D
Template Known Secondary structure																	T	T					B		T	T	S	S	B						T	T		S	S							T	T															T	T		T	T					T	T									S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		N	G	R	V	C	G	V	I	C	G	D	D	I	.	.	.	.	.	.	L	R	A	R	Y	V	V	L	A	E	G	A	N	S	V	L	A	E	R	H	G	L	V	T	R	P	A	G	E	A	M	A	L	G	I	K	E	V	L	S	L	E	T	S	A	I	E	E	R	F	H	L	E	N	N	E	G	A	A	L	L
Query Conservation															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																	.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		D	G	H	V	R	G	L	V	A	M	N	M	M	E	G	T	L	V	Q	I	R	A	N	A	V	V	M	A	T	G	G	A	G	R	V	.	.	.	.	Y	R	Y	N	T	N	G	G	I	V	T	G	D	G	M	G	M	A	L	S	H	G	V	P	L	R	D	M	E	F	V	Q	Y	H	P	T	G	L	P	G	S
Template Known Secondary structure		S	S	B									T	T	T	T								S										G	G	G	.	.	.	.	S	S	S	B	S			T	T		S								G	G	G	T					S	T	T										T	T	T
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																																																		.	.	230	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	G	R	I	C	D	D	L	P	G	G	A	F	L	Y	T	N	Q	Q	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	G	I	V	C	P	L	S
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	L	M	T	E	G	C	R	G	E	G	G	I	L	V	N	K	N	G	Y	R	Y	L	Q	D	Y	G	M	G	P	E	T	P	L	G	E	P	K	N	K	Y	M	E	L	G	P	R	D	K	V	S	Q	A	F	W	H	E	W	R	K	G	N	T	I	S	T	P	R	G	D	V	V	Y	L	D	L	R	H	L
Template Known Secondary structure				B			T					T	T						T	T	S		B	G	G	G	T	T	T	S		S				S	S				T	T	S	G	G	G	S																T		S				T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		S	L	T	Q	S	R	V	P	A	S	E	L	L	T	R	F	K	A	H	P	A	V	R	P	L	I	K	N	T	E	S	L	E	Y	G	A	H	L	V	P	E	G	G	L	H	S	M	P	V	Q	Y	A	G	N	G	W	L	L	V	G	D	A	L	.	.	R	S	C	V	N	T	G	I	S	V	R	G	M	D	M
Query Conservation																																																																	.	.
Alig confidence																																																		.															.	.
Template Conservation																																																		.
Template Sequence		G	E	K	K	L	H	E	R	L	P	F	I	C	E	L	A	K	A	Y	V	G	V	D	P	V	K	E	P	I	P	V	R	P	T	A	H	Y	T	M	G	G	I	E	T	D	Q	N	C	.	E	T	R	I	K	G	L	F	A	V	G	E	C	S	S	V	G	L	H	G	A	N	R	L	G	S	N	S	L	A	E
Template Known Secondary structure																					S				T	T	T	S																			T	T	S	.	B		S	S	B	T					G	G	G				S	S	S	T	T	S			T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	G	A	Q	A	A	A	Q	T	L	I	S	A	C	Q	H	R	E	P	Q	N	L	F	P	L	Y	H	H	N	V	E	R	S	L	L	W	D	V	L	Q	R	Y	Q	H	V	P	A	L	L	Q	R	P	G	W	Y	R	T	W	P	A	L	M	Q	D	I	S	R	D	L	W	D	Q	G	D	K	P	V	P
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	V	F	G	R	L	A	G	E	Q	A	T	E	R	A	A	T	A	G	N	G	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	I	E	A	Q	A	A	G	V	E	Q	R	L	K	D	L	V	N	Q	D	G	G	E	N	W	A
Template Known Secondary structure																			T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T					B
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.																														.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	R	Q	L	F	W	H	H	L	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	R	D	E	M	G	L	A	M	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.