Phyre 2 alignment of Q46904 with c3lzxB

Job Description Q46904
Confidence 99.38% Date Thu Jan 5 12:35:41 GMT 2012

Rank 92 Aligned Residues 285

% Identity 15% Template c3lzxB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase 2; PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii)

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.				.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence	M	E	D	D	.	.	.	C	D	I	I	I	I	G	A	G	I	A	G	T	A	C	A	L	R	C	A	R	A	G	L	S	V	L	L	L	E	R	A	E	I	P	G	S	K	N	L	S	G	G	R	L	Y	T	H	A	L	A	E	L	L	P	Q	F	H	L	T	A	P	L	E	R	R	I	T	H	E	S	L	S
Query Conservation					.	.	.
Alig confidence					.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	M	R	E	D	T	K	V	Y	D	I	T	I	I	G	G	G	P	V	G	L	F	T	A	F	Y	G	G	M	R	Q	A	S	V	K	I	I	E	S	L	P	Q	L	G	G	Q	L	S	A	L	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																S													T	T								S	S	S	S	S									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.

	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	L	T	P	D	G	V	T	T	F	S	S	L	Q	P	G	G	E	S	W	S	V	L	R	A	R	F	D	P	W	L	V	A	E	A	E	K	E	G	V	E	C	I	P	G	A	T	V	D	A	L	Y	E	E	N	G	R	V	C	G	V	I	C	G	D	D	I	L	R	A	R	Y	V	V	L	A	E	G	A	N
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	E	K	Y	I	Y	D	V	A	G	F	P	K	I	R	A	Q	E	L	I	N	N	L	K	E	Q	M	A	K	F	D	Q	T	I	C	L	E	Q	A	V	E	S	V	E	K	Q	A	D	G	V	F	K	L	V	T	N	E	E	T	H	Y	S	K	T	V	I	I	T	A	G	N	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	T	S					S	T	T		S	S															T	T	S							S										T	T	S							S	S													T	T	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.
Template SS confidence
										52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.													180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Query Sequence	S	V	L	A	E	R	H	G	L	V	T	R	P	A	G	E	A	M	A	L	G	I	.	.	.	.	.	.	.	.	.	.	.	.	K	E	V	L	S	L	E	T	S	A	I	E	E	R	F	H	L	E	N	N	E	G	A	A	L	L	F	S	G	R	I	C	D	D	L	P	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	F	K	P	R	K	L	E	L	E	N	A	E	Q	Y	E	G	K	N	L	H	Y	F	V	D	D	L	Q	K	F	A	G	R	R	V	A	I	L	G	G	G	D	S	A	V	D	W	A	L	M	L	E	P	I	A	K	E	V	S	I	I	H	R	R	D	K	F	R	A	H	E	H	S	V	E	N	L	H	A	S
Template Known Secondary structure										T	T	G	G	G	G	B	T	T	T			S	S				G	G	G	G	T	T	S							S	S											T	T	T	S	S							S	S	S	S		S	S											S
Template Predicted Secondary structure
Template SS confidence
	123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

								216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	G	G	A	F	L	Y	T	N	Q	Q	T	L	S	L	G	I	V	C	P	L	S	S	L	T	Q	S	R	V	P	A	S	E	L	L	T	R	F	K	A	H	P	A	V	R	P	L	I	K	N	T	E	S	L	E	Y	G	A	H	L	V	P	E	G	G	L	H	S	M	P	V	Q	Y	A
Query Conservation	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.																																																														.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence	K	V	N	V	L	T	P	F	V	P	A	E	L	I	G	E	D	K	I	E	Q	L	V	L	E	E	V	K	G	D	R	K	E	I	L	E	I	D	D	L	I	V	N	Y	G	F	V	S	S	L	G	P	I	K	N	W	G	L	D	I	E	K	N	S	I	V	V	K	.	.	.	.	.	.	S	T	M	E	T	N
Template Known Secondary structure	S					T	T									S	S	S									T	T	S	S								S													G	G	G	G	G	S						T	T						.	.	.	.	.	.	T	T	S	B		S
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270							.	.	.	.	.	.

	289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	N	G	W	L	L	V	G	D	A	L	R	S	C	V	N	T	G	I	S	V	R	G	M	D	M	A	L	T	G	A	Q	A	A	A	Q	T	L	I	S	A	C	Q	H	R
Query Conservation
Alig confidence														.	.	.	.
Template Conservation														.	.	.	.
Template Sequence	I	E	G	F	F	A	A	G	D	I	C	T	Y	.	.	.	.	E	G	K	V	N	L	I	A	S	G	F	G	E	A	P	T	A	V	N	N	A	K	A	Y	M	D	P	K
Template Known Secondary structure	S	T	T					G	G	G				.	.	.	.	T	T																									T	T
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
	277	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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