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Job DescriptionQ46904
Confidence100.00%DateThu Jan 5 12:35:41 GMT 2012
Rank12Aligned Residues354
% Identity15%Templatec3atrA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:conserved archaeal protein; PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30......... 40.........50.........60.........70.........80..
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Query Sequence  DCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIP. GSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPD
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Template Sequence  KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQ
Template Known Secondary structure 
S

SSSSS


SS
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   83......90.........100.........110.........120.........130......... 140.........150......
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Query Sequence  GVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVI. . . . . . CGDDILRARYVVLAEGA
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Template Sequence  TVWTVNGE. . . . . GFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGY
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   85....90.. .......100.........110.........120.........130.........140.........150.........
 
   157..160.........170.........180.........190.........200.........210.........220.........230......
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Query Sequence  NSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLS
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Template Sequence  SRSFRSKLPPELPITEDLDDKDADVAYR. . . . EVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGG
Template Known Secondary structure  G
TTGGGS
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   160.........170.........180....... ..190.........200.........210.........220.........230.....
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
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Query Sequence  SLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMAL
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Template Sequence  MGY. . . PSIHEYYKKYLD. . . . . KYAPDVDKSKLLVKGGALVPTRRPLYTMAWNGIIVIGDSGFTV. . NPVHGGGKGSAM
Template Known Secondary structure  S

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   236.. .240.........250 .........260.........270.........280.........290... ......300.....
 
   317..320.........330.... .....340.........350. ........360.........370......
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Query Sequence  TGAQAAAQTLISACQHRE. PQNLFPLYHHNVERSLL. . WDVLQRYQHVPALLQRPGWYRTWPA
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Template Sequence  ISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDIFRRFLQKLSNDDINYGMKK
Template Known Secondary structure  T

STTTTTTTT

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   306...310.........320.........330.........340.........350.........360........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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