Job Description Q46904 Confidence 99.73% Date Thu Jan 5 12:35:41 GMT 2012 Rank 37 Aligned Residues 313 % Identity 12% Template c1yvvB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase, flavin-containing; PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10. Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.
Query Sequence		C	D	I	I	I	I	G	A	G	I	A	G	T	A	C	A	L	R	C	A	R	A	G	L	S	V	L	L	L	E	R	A	E	I	P	G	S	K	N	L	S	G	G	R	L	Y	T	H	A	L	A	E	L	L	P	Q	F	H	L	T	A	P	L	E	R	R	I	.	.	.	.	.	.	T	H	E	S	L	S	L
Query Conservation																																																																					.	.	.	.	.	.
Alig confidence																																										.																											.	.	.	.	.	.
Template Conservation																																										.
Template Sequence		V	P	I	A	I	I	G	T	G	I	A	G	L	S	A	A	Q	A	L	T	A	A	G	H	Q	V	H	L	F	D	K	S	R	G	S	G	G	R	X	S	.	S	K	R	S	D	A	G	A	L	D	X	G	A	Q	Y	F	T	A	R	D	R	R	F	A	T	A	V	K	Q	W	Q	A	Q	G	H	V	A	E	W
Template Known Secondary structure										S													T	T								S	S	S	S	S		G	G	G		.					T	T	S					S				B				S														T	S
Template Predicted Secondary structure																																										.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	P	D	G	V	T	T	F	S	S	L	Q	P	G	G	E	S	W	S	V	L	R	A	R	F	D	P	W	L	V	A	E	A	E	K	E	G	V	E	C	I	P	G	A	T	V	D	A	L	Y	E	E	N	G	R	V	C	G	V	I	C	G	D	D	I	L	R	A	R	Y	V	V	L	A	E	G	A	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	L	L	Y	N	F	H	A	G	R	L	S	P	S	P	D	E	Q	V	R	W	V	G	K	P	G	X	S	A	I	T	R	A	X	R	G	D	X	P	V	S	F	S	C	R	I	T	E	V	F	R	G	E	E	H	W	N	L	L	D	A	E	G	Q	N	H	G	P	F	S	H	V	I	I	A	T	P	A	P
Template Known Secondary structure									S	S	S							S	S	S						S	S	S	T	T								T	T						S										S	S							T	T	S							S						S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		159	160	.	.	.	.	.	.	.	.								.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure												.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.
Query Sequence		V	L	A	E	R	H	G	L	V	T	.	.	.	.	.	.	.	R	P	A	G	E	A	M	A	L	G	I	K	E	V	L	S	L	E	T	S	A	I	E	E	R	F	H	L	E	N	N	E	G	A	A	L	L	F	S	G	R	I	C	D	D	L	P	G	G	A	F	L	Y	T	N	Q	Q	T	L	S	L	G	I
Query Conservation												.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.																																																											.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		Q	A	S	T	L	L	A	A	A	P	K	L	A	S	V	V	A	G	V	K	X	D	P	T	W	A	V	A	L	A	F	E	T	P	L	Q	T	P	X	Q	G	C	F	V	Q	D	S	P	L	D	W	L	A	R	N	R	S	K	P	E	R	D	D	T	L	D	T	W	I	L	H	A	T	S	Q	.	.	.	.	.
Template Known Secondary structure				G	G	G	G	T	T									T	T														S	S			S		S								S	S	S							G	G	G	S	T	T				S	S											.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	P	L	S	S	L	T	Q	S	R	V	P	A	S	E	L	L	T	R	F	K	A	H	P	A	V	R	P	L	I	K	N	T	E	S	L	E	Y	G	A	H	L	V	P	E	G	G	L	H	S	M	P	V	Q	Y	A	G	N	G	W	L	L	V	G	D	A	L	R	S	C	V	N	T	G	I	S	V	R	G
Query Conservation
Alig confidence																																																																							.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.
Template Sequence		W	S	R	Q	N	L	D	A	S	R	E	Q	V	I	E	H	L	H	G	A	F	A	E	L	I	D	C	T	X	P	A	P	V	F	S	L	A	H	R	W	L	Y	A	R	P	A	G	A	H	E	W	G	A	L	S	D	A	D	L	G	I	Y	V	C	G	D	W	C	L	.	.	.	.	.	.	.	.	S	G	R
Template Known Secondary structure						T	T	T																T	T		S	S						S													S	S					S					T	T	T	T						G	G	G	T	.	.	.	.	.	.	.	.	T	S	S
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.									.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	M	A	L	T	G	A	Q	A	A	A	Q	T	L	I	S	A	C	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	G	A	W	L	S	G	Q	E	A	A	R	R	L	L	E	H	L	Q
Template Known Secondary structure																				T	T
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions