Job Description Q46904 Confidence 99.72% Date Thu Jan 5 12:35:41 GMT 2012 Rank 40 Aligned Residues 305 % Identity 21% Template c1pj6A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:n,n-dimethylglycine oxidase; PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.
Predicted Secondary structure																												.											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	C	D	I	I	I	I	G	A	G	I	A	G	T	A	C	A	L	R	C	A	R	A	G	L	S	.	V	L	L	L	E	R	A	E	I	P	.	.	.	G	S	K	N	L	S	G	G	R	L	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	R	I	V	I	I	G	A	G	I	V	G	T	N	L	A	D	E	L	V	T	R	G	W	N	N	I	T	V	L	D	Q	G	P	L	N	M	P	G	G	S	T	S	H	A	P	G	L	V	F	Q	T	N	P	S	K	T	M	A	S	F	A	K	Y	T	V	E	K	L	L	S	L	T	E	D	G	V	S	C
Template Known Secondary structure											S													T	T									S	S		T	T				S	G	G	G	G										S																					T	T			S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	L	A	E	L	L	P	Q	F	H	L	T	A	P	L	E	R	R	I	T	H	E	S	L	S	L	L	T	P	.	D	G	V	T	T	F	S	S	L	Q	P	G	G	E	S	W	S	V	L	R	A	R	F	D	P	W	L	V	A	E	A	E	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation
Template Sequence		F	N	Q	V	G	G	L	E	V	A	T	T	E	T	R	L	A	D	L	K	R	K	L	G	Y	A	A	A	W	G	I	E	G	R	L	L	S	P	A	E	C	Q	E	L	Y	P	L	L	D	G	E	N	I	L	G	G	L	H	V	P	S	D	G	L	A	S	A	A	R	A	V	Q	L	L	I	K	R	T	E	S
Template Known Secondary structure												S	S																		T																T	T	S		G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		E	G	V	E	C	I	P	G	A	T	V	D	A	L	Y	E	E	N	G	R	V	C	G	V	I	C	G	D	D	I	L	R	A	R	Y	V	V	L	A	E	G	A	N	S	V	.	L	A	E	R	H	G	L	V	T	R	P	A	G	E	A	M	A	L	G	I	K	E	V	L	S	L	E	T	S	A	I	E	E	R
Query Conservation																																															.
Alig confidence																																															.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	V	T	Y	R	G	S	T	T	V	T	G	I	E	Q	S	G	G	R	V	T	G	V	Q	T	A	D	G	V	I	P	A	D	I	V	V	S	C	A	G	F	W	G	A	K	I	G	A	M	I	G	M	A	V	P	L	L	P	L	A	H	Q	Y	V	K	.	.	.	.	.	.	.	.	.	.	T	T	P	V
Template Known Secondary structure		T	T						S										T	T								T	T						S							G	G	G							T	T	T															.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.											230	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.																					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	H	L	E	N	N	E	G	A	A	L	L	F	S	G	R	I	C	D	D	L	P	G	G	A	F	L	Y	T	N	Q	Q	T	L	S	L	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	C	P	L	S	S	L	T	Q	S	R	V	P	A	S	E	L	L	T	R	F	K
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	Q	Q	G	R	N	D	Q	P	N	G	A	R	L	P	I	L	R	H	Q	D	Q	D	L	Y	Y	R	E	H	G	D	R	Y	G	I	G	S	Y	A	H	R	P	M	P	V	D	V	D	T	L	G	A	Y	A	P	E	T	V	S	E	H	H	M	P	S	R	L	D	F	T	L	E	D	F	L	P	A	W	E
Template Known Secondary structure		G	G	G	T	T	T	S		T	T	T				S						G	G	G	T							T	T									S				B			G	G	G	S					G	G	G		B	T	T	B	S	T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	P	A	V	R	P	L	I	K	N	T	E	S	L	E	Y	G	A	H	L	V	P	E	G	G	L	H	S	M	P	V	Q	Y	A	G	N	G	W	L	L	V	G	D	A	L	R	S	C	V	N	T	G	I	S	V	R	G	M	D	M	A	L	T	G	A	Q	A	A	A	Q	T	L	I	S
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	K	Q	L	L	P	A	L	A	D	S	E	I	E	D	G	F	N	G	I	F	S	.	.	.	.	.	.	.	.	.	.	F	T	P	D	G	G	P	L	L	G	E	S	K	E	L	D	G	F	Y	V	A	E	A	V	W	V	T	H	S	A	G	V	A	K	A	M	A	E	L	L	T	T
Template Known Secondary structure								G	G	G	G	G	S												.	.	.	.	.	.	.	.	.	.			T	T	S								S	S	S	B	T						S			G	G	G
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.											.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions