Job Description P30011 Confidence 47.84% Date Thu Jan 5 11:45:42 GMT 2012 Rank 386 Aligned Residues 93 % Identity 16% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.												.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.																		.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	Q	A	V	E	K	A	S	W	L	H	P	D	A	P	V	E	V	E	V	E	N	.	.	.	.	.	.	.	.	.	.	.	L	E	E	L	D	E	A	L	K	A	G	A	D	I	I	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	F	E	T	E	Q	M	R	E	A	V
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.										.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		V	R	E	I	L	K	A	X	G	E	A	V	R	.	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K
Template Known Secondary structure											T	T		S	.	S								S		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S
Template Predicted Secondary structure															.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	T	N	G	K	A	L	L	E	V	S	G	N	V	T	D	K	T	L	R	E	F	A	E	T	G	V	D	F	I	S	V	G	A	L	T	K	H	V	Q	A	L
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		G	D	.	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P	F	V
Template Known Secondary structure				.		T	T	S						S	S			S									T	T	S	S					S							G	G	G
Template Predicted Secondary structure				.
Template SS confidence
		193	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions