Job Description P30011 Confidence 25.58% Date Thu Jan 5 11:45:42 GMT 2012 Rank 488 Aligned Residues 96 % Identity 15% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		A	L	N	F	V	Q	T	L	S	G	V	A	S	K	V	R	H	Y	V	E	L	L	E	G	T	N	T	Q	L	L	D	T	R	K	T	L	P	G	L	R	S	A	L	K	Y	A	V	L	C	G	G	G	A	N	H	R	L	G	L	S	D	A	F	.	.	.	.	.	L	I	K	E	N	H	I	I	A	S	G	S
Query Conservation																																																																	.	.	.	.	.
Alig confidence																																				.	.																												.	.	.	.	.
Template Conservation																																				.	.
Template Sequence		I	I	N	L	K	R	T	W	E	K	L	L	L	A	A	R	A	I	V	A	I	E	N	P	A	D	V	S	V	I	S	S	R	N	.	.	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	F	T	N	Q	I	Q	A	A	F	R	E	P	R	L	L	V	V	T	D
Template Known Secondary structure																						S	S		G	G	G							S		.	.																				S	S								T	T		S	S					S					S
Template Predicted Secondary structure																																				.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		V	R	Q	A	V	E	K	A	S	W	L	.	H	P	D	A	P	V	E	V	E	V	E	N
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		P	R	A	D	H	Q	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L	C	N	T
Template Known Secondary structure		T	T	T	T											T									T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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