Job Description P30011 Confidence 32.05% Date Thu Jan 5 11:45:42 GMT 2012 Rank 455 Aligned Residues 126 % Identity 18% Template c2qghA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine Resolution 2.30 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	V	A	S	K	V	R	H	Y	V	E	L	L	E	G	T	N	T	Q	L	L	D	T	R	K	T	L	P	G	L	R	S	A	L	K	Y	A	V	L	C	G	G	G	A	N	H	R	L	G	L	S	D	A	F	L	I	K	E	N	H	I	I	A	S	G	S	V	R	Q	A	V	E	K	A	S	W	L	H
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	K	I	K	Q	A	F	L	N	Y	K	E	A	F	K	G	R	K	S	L	I	C	Y	A	L	K	A	N	S	N	L	S	I	L	S	L	L	A	H	L	E	S	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	C	V	S	I	G	E	I	Q	R	A	L	K	A	G	I
Template Known Secondary structure															T	T		S	S								G	G	G													T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S										T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.																				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		208	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260																						.	.	.
Predicted Secondary structure										.	.																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	A	P	V	E	V	E	.	.	V	E	N	L	E	E	L	D	E	A	L	K	A	G	A	D	I	I	M	L	D	N	F	E	.	T	E	Q	M	R	E	A	V	K	R	T	N	G	K	A	L	L	E	V	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	T
Query Conservation										.	.																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																									.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	P	Y	R	I	V	F	S	G	V	G	K	S	A	F	E	I	E	Q	A	L	K	L	N	I	L	F	L	N	V	E	S	F	M	E	L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S	I	R	I	N	P	N	I	D	A	K	T	H	P	Y	I	S	T	G	L	K	E	N	K	F	G	V	G
Template Known Secondary structure			G	G	G						T	T												T	T		S						S															T									B								S		G	G	G	B			S	T	T	S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		264	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	T	L	R	E	F	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	E	A	L	E	M	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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