Job Description P30011 Confidence 99.92% Date Thu Jan 5 11:45:42 GMT 2012 Rank 25 Aligned Residues 259 % Identity 15% Template c2im5C_ PDB info PDB header:transferase Chain: C: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of nicotinate phosphoribosyltransferase2 from porphyromonas gingivalis Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		R	R	Y	N	P	D	T	R	R	D	E	L	L	E	R	I	N	L	D	I	P	G	A	V	A	Q	A	L	R	E	D	L	G	G	T	V	D	A	N	N	D	I	.	.	.	.	.	T	A	K	L	L	P	E	N	S	R	S	H	A	T	V	I	T	R	E	N	G	V	F	C	G	K	R	W	V	E	E	V	F
Query Conservation																																												.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.			.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	R	N	R	Q	G	F	T	E	E	F	A	E	L	V	R	G	E	I	R	A	M	A	A	L	S	L	T	R	D	.	.	.	.	.	.	.	.	.	E	K	E	F	L	Q	R	E	L	P	Y	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	Y	I
Template Known Secondary structure				T	T																			G	G	G							.	.	.	.	.	.	.	.	.										T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.										.	.	.	.	70	.	.	.	.	.	.	.	.																								.	80	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.														.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	L	A	G	D	D	V	T	I	I	W	H	V	D	D	G	D	V	I	N	A	N	Q	S	L	F	E	L	E	G	P	S	R	V	L	L	T	G	E	R	T	A	L	N	F	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	S	G	V	A	S	K	V	R	H	Y	V	E	L	L	E	G	T
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.
Template Sequence		D	F	L	.	.	D	G	F	R	F	D	P	E	E	V	T	V	S	I	D	A	Q	G	H	L	D	I	R	A	Q	G	L	L	Y	R	V	T	L	W	E	T	P	I	L	A	V	I	S	E	L	Y	Y	R	F	I	G	A	E	P	D	W	K	Q	V	E	E	V	T	R	S	K	G	E	L	M	R	E	H	R	A
Template Known Secondary structure					.	.							G	G	G							T	T	S														G	G	G																T	T																						T	T
Template Predicted Secondary structure					.	.
Template SS confidence
		83	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		146	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.			190	.	.	.	.								.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.																											.	.	.	.	.								.	.						.	.	.	.	.	.	.
Query SS confidence													.	.	.	.																											.	.	.	.	.								.	.						.	.	.	.	.	.	.
Query Sequence		N	T	Q	L	L	D	T	R	K	T	L	.	.	.	.	P	G	L	R	S	A	L	K	Y	A	V	L	C	G	G	G	A	N	H	R	L	G	L	S	D	A	.	.	.	.	.	F	L	I	K	E	N	H	.	.	I	I	A	S	G	.	.	.	.	.	.	.	S	V	R	Q	A	V	E	K	A	S	W	L	H
Query Conservation													.	.	.	.																											.	.	.	.	.								.	.						.	.	.	.	.	.	.
Alig confidence													.	.	.	.																											.	.	.	.	.								.	.						.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	F	S	I	F	G	M	R	R	R	F	S	L	E	V	E	D	R	V	T	D	I	L	K	Q	Y	A	G	E	S	L	F	G	T	S	N	V	H	L	A	H	K	H	G	L	R	V	S	G	T	H	P	H	E	W	I	Q	F	H	G	A	I	Y	G	Y	K	M	A	N	Y	V	A	M	E	D	W	I	N	V	Y
Template Known Secondary structure								G	G	G		S																S	G	G	G					S	B								T																					T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		208	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure														.	.	.	.	.	.																																.	.	.	.	.	.	.																							.	.
Query SS confidence														.	.	.	.	.	.																																.	.	.	.	.	.	.																							.	.
Query Sequence		P	D	A	P	V	E	V	E	V	E	N	L	.	.	.	.	.	.	E	E	L	D	E	A	L	K	A	G	A	D	I	I	M	L	D	N	F	E	T	E	Q	M	R	E	A	V	K	R	T	.	.	.	.	.	.	.	N	G	K	A	L	L	E	V	S	G	N	V	T	D	K	T	L	R	E	F	A	E	.	.
Query Conservation														.	.	.	.	.	.																																.	.	.	.	.	.	.																							.	.
Alig confidence														.	.	.	.	.	.																																.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		D	G	D	L	G	T	V	L	T	D	T	Y	T	T	D	V	F	M	R	N	F	S	K	K	H	A	M	L	F	T	S	L	R	H	D	S	G	D	P	E	I	F	I	E	K	A	V	R	R	Y	E	E	L	R	V	D	P	K	I	K	Y	I	I	F	S	D	S	L	T	P	Q	R	A	I	E	I	Q	K	L	C
Template Known Secondary structure		T	T	S	S							T	T																								S	S																T	T			G	G	G							S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		273	.			.	.	.	.	.	280	.	.		.	.					.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure				.	.									.			.	.	.	.
Query SS confidence				.	.									.			.	.	.	.
Query Sequence		T	G	.	.	V	D	F	I	S	V	G	A	.	L	T	.	.	.	.	K	H	V	Q	A	L	D	L	S	M	R	F
Query Conservation				.	.									.			.	.	.	.
Alig confidence				.	.									.			.	.	.	.
Template Conservation
Template Sequence		A	G	R	I	K	A	S	F	G	I	G	T	N	L	T	N	D	V	G	G	G	V	E	P	L	N	I	V	M	K	L
Template Known Secondary structure		T	T	T	S												S			S	T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions