Job Description P30011 Confidence 99.94% Date Thu Jan 5 11:45:42 GMT 2012 Rank 24 Aligned Residues 261 % Identity 12% Template c1vlpA_ PDB info PDB header:transferase Chain: A: PDB Molecule:nicotinate phosphoribosyltransferase; PDBTitle: crystal structure of a putative nicotinate phosphoribosyltransferase2 (yor209c, npt1) from saccharomyces cerevisiae at 1.75 a resolution Resolution 1.75 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		R	Y	N	P	D	T	R	R	D	E	L	L	E	R	I	N	L	D	I	P	G	A	V	A	Q	A	L	R	E	D	.	L	G	G	T	V	D	A	N	N	D	I	T	A	K	L	L	P	E	N	S	R	S	H	A	T	V	I	T	R	E	N	G	V	F	C	G	K	R	W	V	E	E	V	F	I	Q	L	A	G
Query Conservation																																.
Alig confidence																																.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	S	Q	L	T	F	N	K	E	A	I	N	W	L	K	E	Q	F	S	Y	L	G	N	L	R	F	T	E	E	E	I	E	Y	L	K	Q	E	I	P	Y	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	Y	I	K	Y	I	S	S
Template Known Secondary structure		S		T	T			B															G	G	G																T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.																													.	.	.	.	.	.	.	.	90
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.											.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.														.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	V	T	I	I	W	H	V	D	D	G	D	V	I	N	A	N	Q	S	L	.	.	.	.	.	.	.	.	.	.	F	E	L	E	G	P	S	R	V	L	L	T	G	E	R	T	A	L	N	F	V	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	G	V	A	S	K	V	R	H	Y	V	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.													.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.
Template Sequence		S	N	Y	K	L	H	.	.	.	P	E	E	Q	I	S	F	T	S	E	E	I	E	G	K	P	T	H	Y	K	L	K	I	L	V	S	G	S	W	K	D	T	I	L	Y	E	I	P	L	L	S	L	I	S	E	A	Y	F	K	F	V	D	I	D	W	D	Y	E	N	Q	L	E	Q	A	E	K	K	A	E	T	L
Template Known Secondary structure		T	T					.	.	.													T	T																			T	T	S																T							T	T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		91	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.												.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.			190	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.								.	.							.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.								.	.							.	.	.	.	.	.	.
Query Sequence		L	L	E	G	T	N	T	Q	L	L	D	T	R	K	T	L	.	.	.	.	.	.	.	.	.	.	.	P	G	L	R	S	A	L	K	Y	A	V	L	C	G	G	G	A	N	H	R	L	G	L	S	D	A	.	.	.	.	.	F	L	I	K	E	N	H	.	.	I	I	A	S	G	S	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.								.	.							.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.								.	.							.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	N	G	I	R	F	S	E	F	G	T	R	R	R	R	S	L	K	A	Q	D	L	I	X	Q	G	I	X	K	A	V	N	G	N	P	D	R	N	K	S	L	L	L	G	T	S	N	I	L	F	A	K	K	Y	G	V	K	P	I	G	T	V	A	H	E	W	V	X	G	V	A	S	I	S	E	D	Y	L	H
Template Known Secondary structure				T	T								S	T	T		S																			S					T	T	T					S	B								T			B																	T			T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
			196	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250									.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.															.																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence		.															.																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		.	V	R	Q	A	V	E	K	A	S	W	L	H	P	D	.	A	P	V	E	V	E	V	E	N	L	E	E	L	D	E	A	.	.	.	.	.	.	L	K	A	G	A	D	I	I	M	L	D	N	F	E	T	E	Q	M	R	E	A	V	K	R	T	.	.	.	.	.	.	.	.	N	G	K	A	L	L	E	V	S
Query Conservation		.															.																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence		.															.																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	K	N	A	X	D	C	W	I	N	T	F	G	A	K	N	A	G	L	A	L	T	D	T	F	G	T	D	D	F	L	K	S	F	R	P	P	Y	S	D	A	Y	V	G	V	R	Q	D	S	G	D	P	V	E	Y	T	K	K	I	S	H	H	Y	H	D	V	L	K	L	P	K	F	S	K	I	I	C	Y	S
Template Known Secondary structure																G	G	G								T	T							T	T			T	T					S							S	S															T	T	S				T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		260	.	.	.	.	.	.				.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.		.	.	.											.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure									.	.	.									.	.									.				.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.									.	.									.				.	.	.	.	.	.	.	.	.	.
Query Sequence		G	N	V	T	D	K	T	.	.	.	L	R	E	F	A	E	T	G	.	.	V	D	F	I	S	V	G	A	.	L	T	K	.	.	.	.	.	.	.	.	.	.	H	V	Q	A	L	D	L	S	M	R	F
Query Conservation									.	.	.									.	.									.				.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.									.	.									.				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	L	N	V	E	K	A	I	T	Y	S	H	A	A	K	E	N	G	X	L	A	T	F	G	I	G	T	N	F	T	N	D	F	R	K	K	S	E	P	Q	V	K	S	E	P	L	N	I	V	I	K	L
Template Known Secondary structure		S	S																T	T													S					S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions