Job Description P30011 Confidence 24.90% Date Thu Jan 5 11:45:42 GMT 2012 Rank 496 Aligned Residues 91 % Identity 14% Template c1kgsA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Resolution 1.50 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.						.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																.															.	.	.	.	.
Query SS confidence																																																.															.	.	.	.	.
Query Sequence		A	F	L	I	K	E	N	H	I	I	A	S	G	S	V	R	Q	A	V	E	K	A	S	W	L	H	P	D	A	P	V	E	V	E	V	E	N	L	E	E	L	D	E	A	L	K	.	A	G	A	D	I	I	M	L	D	N	F	E	T	E	.	.	.	.	.	Q	M	R	E	A	V	K	R	T	N	G	K	A	L
Query Conservation																																																.															.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																				.															.	.	.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		R	V	L	V	V	E	D	E	R	D	L	A	D	L	I	T	E	A	L	K	K	.	.	.	.	.	.	E	X	F	T	V	D	V	C	Y	D	G	E	E	G	X	Y	X	A	L	N	E	P	F	D	V	V	I	L	D	I	X	L	P	V	H	D	G	W	E	I	L	K	S	X	R	E	S	G	V	N	T	P	V
Template Known Secondary structure								S	S														.	.	.	.	.	.	T	T							S	S											S			S						S			S	S	S												T	T
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	V	S	G	N	V	T	D	K	T	L	R	E	F	A	E	T	G	V	D	F	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	X	L	T	A	L	S	D	V	E	Y	R	V	K	G	L	N	X	G	A	D	D	Y
Template Known Secondary structure						S	S									T						S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions