Phyre 2 alignment of P45545 with d3bc8a1

Job Description P45545
Confidence 99.94% Date Thu Jan 5 12:03:04 GMT 2012

Rank 137 Aligned Residues 310

% Identity 11% Template d3bc8a1

SCOP info PLP-dependent transferase-like PLP-dependent transferases SepSecS-like

Resolution 1.65

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																		.	.											.											.	.																																			.	.	.	.
Query SS confidence																		.	.											.											.	.																																			.	.	.	.
Query Sequence	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	.	.	A	A	A	L	V	Q	G	A	G	T	.	G	A	I	R	A	G	L	A	A	L	.	.	L	K	P	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	.	.	.	.
Query Conservation																		.	.											.											.	.																																			.	.	.	.
Alig confidence																		.	.											.											.	.																																			.	.	.	.
Template Conservation
Template Sequence	K	I	T	N	S	L	V	L	N	V	I	K	L	A	G	V	H	S	V	A	S	C	F	V	V	P	M	A	T	G	M	S	L	T	L	C	F	L	T	L	R	H	K	R	P	K	A	K	Y	I	I	W	P	R	I	D	Q	K	S	C	F	K	S	M	V	T	A	G	F	E	P	V	V	I	E	N	V	L	E	G
Template Known Secondary structure															T		T	T								S	S																		T	T																					T	T												T
Template Predicted Secondary structure
Template SS confidence
	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

					121	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.												.	.	.																																														.	.	.	.	.	.
Query SS confidence	.	.	.	.												.	.	.																																														.	.	.	.	.	.
Query Sequence	.	.	.	.	N	D	L	S	A	L	K	Q	V	V	D	.	.	.	E	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	L	A	D	V	L	A	T	L	R	A	A	G	V	P	A	L	T	D	D	N	Y	A	V	M	.	.	.	.	.	.	K	V	A	R	I	G	C	E	C	G	A
Query Conservation	.	.	.	.												.	.	.																																														.	.	.	.	.	.
Alig confidence	.	.	.	.												.	.	.																																														.	.	.	.	.	.
Template Conservation
Template Sequence	D	E	L	R	T	D	L	K	A	V	E	A	K	I	Q	E	L	G	P	E	H	I	L	C	L	H	S	T	T	A	C	F	A	P	R	V	P	D	R	L	E	E	L	A	V	I	C	A	N	Y	D	I	P	H	V	V	N	N	A	Y	G	L	Q	S	S	K	C	M	H	L	I	Q	Q	G	A	R	V	G	R	I
Template Known Secondary structure	T																		G	G	G								S	S			T	T	B																T								T	T	T	T	T															S
Template Predicted Secondary structure
Template SS confidence
	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																						.																														.	.
Query SS confidence																						.																														.	.
Query Sequence	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	V	G	A	V	V	G	.	D	A	D	V	I	N	R	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	.	.	G	L	V	F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A
Query Conservation																						.																														.	.
Alig confidence																						.																														.	.
Template Conservation
Template Sequence	D	A	F	V	Q	S	L	D	N	F	M	V	P	V	G	G	A	I	I	A	G	F	N	E	P	F	I	Q	D	I	S	K	M	Y	P	G	R	A	S	A	S	P	S	L	D	V	L	I	T	L	L	S	L	G	C	S	G	Y	R	K	L	L	K	E	R	K	E	M	F	V	Y	L	S	T	Q	L	K	K	L	A
Template Known Secondary structure											S			S	S							S												S		S		B		S
Template Predicted Secondary structure
Template SS confidence
	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.							.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	L	I	V	E	F	.	.	.	.	.	.	H	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I
Query Conservation																						.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																		.	.
Template Conservation																																													.	.
Template Sequence	E	A	H	N	E	R	L	L	Q	T	P	H	N	P	I	S	L	A	M	T	L	K	T	I	D	G	H	H	D	K	A	V	T	Q	L	G	S	M	L	F	T	R	Q	V	.	.	S	G	A	R	A	V	P	L	G	N	V	Q	T	V	S	G	H	T	F	R	G	F	M	S	H	A	D	N	Y	P	C	A	Y	L
Template Known Secondary structure			T	T			B				T	T		S	S							T	T	T	S	S	S	S	S													T	T		.	.		S						S							T	T					T	T	T	T	T	S	S			S	S
Template Predicted Secondary structure																																													.	.
Template SS confidence
	357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400			.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.

	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	I	N	P	N	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	A	A	A	A	I	G	M	K	M	Q	D	V	D	L	F	I	K	R	L	D	K	C
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
	435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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