Phyre 2 alignment of P45545 with d1yaaa

Job Description P45545
Confidence 99.86% Date Thu Jan 5 12:03:04 GMT 2012

Rank 210 Aligned Residues 306

% Identity 16% Template d1yaaa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 2.05

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.
Predicted Secondary structure																																									.	.	.	.	.																											.	.
Query SS confidence																																									.	.	.	.	.																											.	.
Query Sequence	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	.	.	.	.	.	D	A	F	H	A	Q	A	A	A	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	.	.	L	K	P	G	Q	R	L
Query Conservation																																									.	.	.	.	.																											.	.
Alig confidence																																									.	.	.	.	.																											.	.
Template Conservation
Template Sequence	V	L	P	S	V	K	A	A	E	K	L	I	H	N	D	S	S	Y	N	H	E	Y	L	G	I	T	G	L	P	S	L	T	S	N	A	A	K	I	I	F	G	T	Q	S	D	A	L	Q	E	D	R	V	I	S	V	Q	S	L	S	G	T	G	A	L	H	I	S	A	K	F	F	S	K	F	F	P	D	K	L	V
Template Known Secondary structure														T		T	T								T	T																T	T						T	T																										T	T
Template Predicted Secondary structure
Template SS confidence
	49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

	94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.
Predicted Secondary structure																													.	.	.	.	.	.	.												.	.																					.	.	.
Query SS confidence																													.	.	.	.	.	.	.												.	.																					.	.	.
Query Sequence	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	.	.	.	.	.	.	.	D	L	S	A	L	K	Q	V	V	D	E	.	.	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	.	.	.	L	A	D	V	L	A	T	L	R
Query Conservation																													.	.	.	.	.	.	.												.	.																					.	.	.
Alig confidence					.																								.	.	.	.	.	.	.												.	.																					.	.	.
Template Conservation					.
Template Sequence	Y	L	S	K	.	P	T	W	A	N	H	M	A	I	F	E	N	Q	G	L	K	T	A	T	Y	P	Y	W	A	N	E	T	K	S	L	D	L	N	G	F	L	N	A	I	Q	K	A	P	E	G	S	I	F	V	L	H	S	C	A	H	N	P	T	G	L	D	P	T	S	E	Q	W	V	Q	I	V	D	A	I	A
Template Known Secondary structure					.	S			T	T							T	T	T											T	T	T	T														S		T	T								S	S		T	T	T
Template Predicted Secondary structure					.
Template SS confidence
	134	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.														.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.												.	210	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.							.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	A	G	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	I	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	.	.	V	G	A	V	V	G	.	.	.	.	.	.	.	.	.	.	.	D	A	D	V	I	N	R
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	K	N	H	I	A	L	F	D	T	A	Y	Q	G	F	A	T	G	D	L	D	K	D	A	Y	A	V	R	L	G	V	E	K	L	S	T	V	S	P	V	F	V	C	Q	S	F	A	K	N	A	G	M	Y	G	E	R	V	G	C	F	H	L	A	L	T	K	Q	A	Q	N	K	T	I	K	P	A	V	T	S	Q
Template Known Secondary structure		T	T								S		T	T	T	S	S	S						T										T	T	T	T										T	T	T	S			G	G	G											S		T	T
Template Predicted Secondary structure
Template SS confidence
	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

	216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.											.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.
Query Sequence	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	.	.	.	.	.	.	.	.	.	.	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	L	I	V	E	F
Query Conservation																											.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																																															.
Template Sequence	L	A	K	I	I	R	S	E	V	S	N	P	P	A	Y	G	A	K	I	V	A	K	L	L	E	T	P	E	L	T	E	Q	W	H	K	D	M	V	T	M	S	S	R	I	T	K	M	R	H	A	L	R	D	H	L	V	K	L	G	T	P	G	.	N	W	D	H	I	V	N	Q	C	G	M	F	S	F	T	G	L
Template Known Secondary structure							T	T	T	S	S															S																																	T		S	S	.			T							S	S
Template Predicted Secondary structure																																																															.
Template SS confidence
	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

	286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence	H	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	.	.	.	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation																																																											.	.	.
Alig confidence	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template Conservation	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	T	P	Q	M	V	K	R	L	E	E	T	H	A	V	Y	L	V	A	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	S	I	A	G	L	N	Q	G	N	V	E	Y	V	A	K	A	I	D	E	V	V	R	F	Y
Template Known Secondary structure	.	.	.																		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G			T	T	T
Template Predicted Secondary structure	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.																															.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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