Phyre 2 alignment of P45545 with d1vp4a

Job Description P45545
Confidence 99.96% Date Thu Jan 5 12:03:04 GMT 2012

Rank 100 Aligned Residues 339

% Identity 14% Template d1vp4a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.82

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence	M	K	T	F	P	L	Q	S	L	T	I	I	E	A	Q	Q	K	Q	F	A	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	.	.	.	.	A	A	A	L	V	Q	G	A	G	T
Query Conservation																																																																			.	.	.	.
Alig confidence																																																																			.	.	.	.
Template Conservation
Template Sequence	A	A	D	K	D	A	I	S	F	G	G	G	V	P	D	P	E	T	F	P	R	K	E	L	A	E	I	A	K	E	I	I	E	K	E	Y	H	Y	T	L	Q	Y	S	T	T	E	G	D	P	V	L	K	Q	Q	I	L	K	L	L	E	R	X	Y	G	I	T	G	L	D	E	D	N	L	I	F	T	V	G	S	Q
Template Known Secondary structure	T	T	S	T	T								S			G	G	G	S																S					T	S				T	T																					S			G	G	G
Template Predicted Secondary structure
Template SS confidence
	28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.													.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	A	I	R	A	G	L	A	A	L	L	K	P	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	D	L	S	.	.	.	.	.	.	.	.	.	.	.	.	A	L	K	Q	V	V	D	E	Q	Q	P	D	A	A	L	V	Q	H	T	R
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence	Q	A	L	D	L	I	G	K	L	F	L	D	D	E	S	Y	C	V	L	D	D	.	P	A	Y	L	G	A	I	N	A	F	R	Q	Y	L	A	N	F	V	V	V	P	L	E	D	D	G	X	D	L	N	V	L	E	R	K	L	S	E	F	D	K	N	G	K	I	K	Q	V	K	F	I	Y	V	V	S	N	F	H
Template Known Secondary structure													T	T								.	S											T	T	T										T	T																	T	T		G	G	G									S	S
Template Predicted Secondary structure																						.
Template SS confidence
	108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

	145	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.								.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure									.	.	.																															.	.	.	.	.	.	.																					.
Query SS confidence									.	.	.																															.	.	.	.	.	.	.																					.
Query Sequence	Q	Q	P	Q	D	S	Y	V	.	.	.	L	A	D	V	L	A	T	L	R	A	A	G	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	I	G	.	.	.	.	.	.	.	C	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	.	V	G	A	V	V	G	D	A	D	V	I
Query Conservation									.	.	.																															.	.	.	.	.	.	.																					.
Alig confidence									.	.	.																															.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence	N	P	A	G	V	T	T	S	L	E	K	R	K	A	L	V	E	I	A	E	K	Y	D	L	F	I	V	E	D	D	P	Y	G	A	L	R	Y	E	G	E	T	V	D	P	I	F	K	I	G	G	P	E	R	V	V	L	L	N	T	F	S	K	V	L	A	P	G	L	R	I	G	X	V	A	G	S	K	E	F	I
Template Known Secondary structure	T	T	T																			T	T								S	S	T	T		B		S	S												T	T	T							S	T	T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
	187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence	N	R	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	.	.	.	.	.	.	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	L	I	V	E	F	H	Q
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence	R	K	I	V	Q	A	K	Q	S	A	D	L	C	S	P	A	I	T	H	R	L	A	A	R	Y	L	E	R	Y	D	L	L	E	Q	L	K	P	T	I	E	L	Y	R	R	K	R	T	V	X	L	N	A	L	E	E	Y	F	S	D	I	P	G	V	K	W	V	K	S	E	G	G	L	F	I	W	L	T	L	P	E
Template Known Secondary structure												S	S																S						T																						S	T	T	S	T	T							S	B	S	S								T
Template Predicted Secondary structure
Template SS confidence
	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

	288		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																															.	.	.
Query SS confidence		.																																																															.	.	.
Query Sequence	P	.	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	S	G	E	E	T	V	.	.	.	L	R	I	L	R	E	S	I
Query Conservation		.																																																															.	.	.
Alig confidence		.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	F	D	T	W	E	X	F	E	Y	A	K	R	K	K	V	F	Y	V	P	G	R	V	F	K	V	Y	D	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	S	X	R	L	S	F	C	L	P	P	D	E	K	I	V	E	G	I	K	R	L	R	E	V	V
Template Known Secondary structure	T			T	T	T	T								T						G	G	G	G		T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S							S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.																			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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