Phyre 2 alignment of P45545 with d1svva

Job Description P45545
Confidence 99.96% Date Thu Jan 5 12:03:04 GMT 2012

Rank 79 Aligned Residues 318

% Identity 14% Template d1svva_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 2.10

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence	K	Q	F	A	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	A	A	A	.	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	L	K	P	G	Q	R	L	L	V
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence	Y	S	F	V	N	D	Y	S	V	G	X	H	P	K	I	L	D	L	X	A	R	D	N	X	T	Q	H	A	G	Y	G	Q	D	S	H	C	A	K	A	A	R	L	I	G	E	L	L	E	R	P	D	A	D	V	H	F	I	S	G	G	T	Q	T	N	L	I	A	C	S	L	A	L	R	P	W	E	A	V	I	A
Template Known Secondary structure				S		S		S	S														T	T					S	T	T		S															T		T	T	S						S																T	T
Template Predicted Secondary structure
Template SS confidence
	16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.

	96	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure										.																		.	.	.	.															.	.	.	.	.	.														.	.
Query SS confidence										.																		.	.	.	.															.	.	.	.	.	.														.	.
Query Sequence	H	D	A	P	V	Y	P	T	T	.	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	.	.	.	.	D	L	S	A	L	K	Q	V	V	D	E	Q	Q	P	.	.	.	.	.	.	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	.	.	D	S	Y	V	L	A	D	V	L	A	T	L	R	A
Query Conservation										.																		.	.	.	.															.	.	.	.	.	.														.	.
Alig confidence										.																		.	.	.	.															.	.	.	.	.	.														.	.
Template Conservation
Template Sequence	T	Q	L	G	H	I	S	T	H	E	T	G	A	I	E	A	T	G	H	K	V	V	T	A	P	C	P	D	G	K	L	R	V	A	D	I	E	S	A	L	H	E	N	R	S	E	H	X	V	I	P	K	L	V	Y	I	S	N	T	T	E	V	G	T	Q	Y	T	K	Q	E	L	E	D	I	S	A	S	C	K	E
Template Known Secondary structure		T	T	S					S	S	T	T					T	T									T	T	S														S		S	T	T	S										S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.
Query Sequence	A	G	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	I	G	C	E	C	G	.	.	.	.	.	.	.	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	V	G	A	V	V	G	D	A	D	V	I	N	R	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V
Query Conservation																									.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	G	L	Y	L	F	L	D	G	A	R	L	A	S	A	L	S	S	P	V	N	D	L	T	L	A	D	I	A	R	L	T	D	X	F	Y	I	G	A	T	K	A	G	G	X	F	G	E	A	L	I	I	L	N	D	A	L	K	P	N	A	R	H	L	I	K	Q	R	G	A	L	X	A	K	G	W	L	L	G	I
Template Known Secondary structure		T								T	T						T	S	T	T													S							T	T	T	T		S	S								S	G	G	G		T	T								T	T				T	T	T
Template Predicted Secondary structure
Template SS confidence
	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	R	G	L	V	F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	L	I	V	E	F	H	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I
Query Conservation
Alig confidence																																	.																																									.	.	.	.	.	.	.
Template Conservation																																	.																																									.	.	.	.	.	.	.
Template Sequence	Q	F	E	V	L	X	K	D	N	L	F	F	E	L	G	A	H	S	N	K	X	A	A	I	L	K	A	G	L	E	A	C	.	G	I	R	L	A	W	P	S	A	S	N	Q	L	F	P	I	L	E	N	T	X	I	A	E	L	N	N	D	F	D	X	Y	T	V	E	P	L	K	D	G	.	.	.	.	.	.	.
Template Known Secondary structure						T	S	T	T																							T	.	T			B	S	S			S	S	S				B											T	T	T										T	T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.																																									.	.	.	.	.	.	.
Template SS confidence
	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

	316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	C	I	X	R	L	C	T	S	W	A	T	E	E	K	E	C	H	R	F	V	E	V	L	K	R	L
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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