Job Description P45545 Confidence 99.89% Date Thu Jan 5 12:03:04 GMT 2012 Rank 193 Aligned Residues 318 % Identity 19% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		9	10	.	.						.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure						.	.	.	.	.																																																										.	.
Query SS confidence						.	.	.	.	.																																																										.	.
Query Sequence		L	T	I	I	.	.	.	.	.	E	A	Q	Q	K	Q	F	A	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	A	A	A	.	.	L	V	Q	G	A	G	T	G	A	I	R	A
Query Conservation						.	.	.	.	.																																																										.	.
Alig confidence						.	.	.	.	.																							.	.	.	.	.																															.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	.	.	.	.	.	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H
Template Known Secondary structure				S	S			B		T	T	S		B												T							.	.	.	.	.		S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.											.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		G	L	A	A	L	L	K	P	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	D	.	.	.	.	.	.	.	.	.	.	L	S	A	L	K	Q	V	V	D	E	Q	Q	P	D	A	A	L	V	Q	H	T	.	R	Q	Q	P	Q	D	S
Query Conservation																																											.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																.																											.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																.
Template Sequence		L	I	H	N	Y	T	E	P	G	D	E	V	L	T	.	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S
Template Known Secondary structure							S		T	T						.		S	S			T									T	T								S	B		T	T	S	S	B																	S									S	S		T	T	T
Template Predicted Secondary structure																.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		151	.	.	.	.	.	.	.	.	160										.	.	.	.	.	.	.	.	.	170	.	.	.												.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																														.	.
Query SS confidence												.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																														.	.
Query Sequence		Y	V	L	A	D	V	L	A	T	L	.	.	.	.	.	.	.	.	.	R	A	A	G	V	P	A	L	T	D	D	N	Y	.	.	.	.	.	.	.	.	.	.	.	A	V	M	K	V	A	R	I	G	C	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	.	.	V	G	A	V	V	G
Query Conservation												.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																														.	.
Alig confidence												.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence		I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G
Template Known Secondary structure																				T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T									S	T	T	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																																																.	.	.	.	.
Query SS confidence																.	.	.	.	.	.																																																.	.	.	.	.
Query Sequence		D	A	D	V	I	N	R	I	R	A	T	L	Y	S	.	.	.	.	.	.	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	.	.	.	.	.	S	A	V	I	A	N	A	Q
Query Conservation																.	.	.	.	.	.																																																.	.	.	.	.
Alig confidence																.	.	.	.	.	.																																																.	.	.	.	.
Template Conservation
Template Sequence		I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R
Template Known Secondary structure				S	S																			T	S	S														T																																		T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		278	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.	350	.	.	.
Predicted Secondary structure					.																																																																	.	.	.
Query SS confidence					.																																																																	.	.	.
Query Sequence		S	K	V	.	L	I	V	E	F	H	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	.	.	.	S	G	E	E	T	V	L	R	I
Query Conservation					.																																																																	.	.	.
Alig confidence					.							.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Conservation												.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	F	F	I	T	I	P	T	D	.	.	S	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	L	A	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	I	A	A	C	G	I	P	K	C	Q	X	T	G	L	A	E	K
Template Known Secondary structure		S	S	S							T	.	.	T											T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	S						T	T
Template Predicted Secondary structure												.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.																												.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		354	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	E	S	I	A	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Y	N	A	X	K	S	L
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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