Job Description P45545 Confidence 100.00% Date Thu Jan 5 12:03:04 GMT 2012 Rank 42 Aligned Residues 304 % Identity 18% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.															.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	A	A	A	L	V	Q	G	A	G	.	T	G	A	I	R	A	G	L	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	K	P	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T
Query Conservation																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																																																										.
Template Sequence		D	G	T	D	V	R	N	Y	G	G	L	D	G	I	V	D	I	R	Q	I	W	A	D	L	L	G	V	P	V	E	Q	V	L	A	G	D	A	S	S	L	N	I	X	F	D	V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	V	K	W	I	C	.	P	V	P	G	Y	D	R
Template Known Secondary structure		T	S		B	T	T	S	S			S	S														T	S		G	G	G					S	S																			T	T		S	S		G	G	G	S	S							.			S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																				.	.	.	.																					.												.	.	.							.
Query SS confidence																				.	.	.	.																					.												.	.	.							.
Query Sequence		T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	.	.	.	.	D	L	S	A	L	K	Q	V	V	D	E	Q	Q	P	D	A	A	L	V	Q	.	H	T	R	Q	Q	P	Q	D	S	Y	V	.	.	.	L	A	D	V	L	A	.	T	L	R	A	A	G	V	P	A	L	T	D	D	N	Y	A
Query Conservation																				.	.	.	.																					.												.	.	.							.
Alig confidence																				.	.	.	.																					.												.	.	.							.
Template Conservation
Template Sequence		H	F	S	I	T	E	R	F	G	F	E	X	I	S	V	P	X	N	E	D	G	P	D	X	D	A	V	E	E	L	V	K	N	P	Q	V	K	G	X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R	V	V	W	D	N	A	Y	A
Template Known Secondary structure									T	T										T	T											T	T	S	T	T									S	S		T	T	T																		S	S	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.														.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		V	M	K	V	A	R	I	G	C	E	C	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	.	G	V	G	A	V	V	G	D	A	D	V	I	N	R	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		V	H	T	L	T	D	E	F	P	E	V	I	D	I	V	G	L	G	E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L	A	G	A	G	V	S	F	F	L	T	S	A	E	N	R	K	W	Y	T	G	H	A	G	I	R	G	I	G	P	N	K	V	N	Q	L	A	H	A	R	Y	F	G
Template Known Secondary structure		T		B	S	S	S															T	T		T	T								S	T	T	T	S		T	T	T	S																							S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.							.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.														.
Query SS confidence																													.	.	.	.	.	.														.
Query Sequence		F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	.	.	.	.	.	.	V	K	S	A	V	I	A	N	A	Q	S	K	V	.	L	I	V	E	F	H	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y
Query Conservation																													.	.	.	.	.	.														.
Alig confidence																													.	.	.	.	.	.														.
Template Conservation
Template Sequence		D	A	E	G	V	R	A	V	X	R	K	H	A	A	S	L	A	P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A	Q	W	T	V	P	A	G	G	Y	F	I	S	L	D	V	V	P	G	T	A	S	R	V	A	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	Y	P	L
Template Known Secondary structure		S																															G	G	G	T								S	B	S	S							S	T	T												T	T						T	T	T	T	S	G	G
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		R	Q	D	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	N	L	R	L	A	P	S	L	P	P	V	E	E	.	L	E	V	A	X	D	G	V	A	T
Template Known Secondary structure		G			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								S	S	S					.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		385	.	.	.	.																	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions