Job Description P45545 Confidence 99.86% Date Thu Jan 5 12:03:04 GMT 2012 Rank 214 Aligned Residues 298 % Identity 17% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.										70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.																		.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.																		.	.
Query Sequence		S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	A	A	A	.	.	.	.	.	.	.	.	.	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	.	.	L	K	P	G	Q	R	L	L	V	H	D	A	P	V
Query Conservation																																								.	.	.	.	.	.	.	.	.																		.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	F	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S	L	H	I	G	F	E	F	L	H	L	W	M	P	K	A	E	F	Y	M	P	S	T	T	W
Template Known Secondary structure							S		T	T	T	S			S				T	T																T	T						T	T								S																		T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		101				.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure			.	.	.																			.	.	.	.	.	.	.	.													.	.																						.	.	.
Query SS confidence			.	.	.																			.	.	.	.	.	.	.	.													.	.																						.	.	.
Query Sequence		Y	.	.	.	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	.	.	.	.	.	.	.	.	F	N	D	L	S	A	L	K	Q	V	V	D	.	.	E	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	.	.	.	L	A	D	V	L	A	T	L	R	A	A	G
Query Conservation			.	.	.																			.	.	.	.	.	.	.	.													.	.																						.	.	.
Alig confidence			.	.	.																			.	.	.	.	.	.	.	.													.	.																						.	.	.
Template Conservation
Template Sequence		P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V	P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	F	L	F	H	A	C	A	H	N	P	S	G	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K
Template Known Secondary structure		T												T	T	T	S								B		T	T	S		S	S	B												S		T	T							S	S	S		T	T	T																				T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.																.	210	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																						.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.																						.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	I	.	.	.	.	.	.	.	.	.	.	G	C	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	.	.	V	G	A	V	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	D	V	I	N	R	I	R
Query Conservation																			.	.	.	.	.	.	.	.	.	.																						.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																						.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	G	L	Y	G	E	R	I	G	C	L	H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T
Template Known Secondary structure									S		T	T	T	S	S	S						T										T										T	T	T	S			G	G	G											S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.											.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Query Sequence		A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	.	.	.	.	.	.	.	.	.	.	R	G	L	V	F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	.	.	.	.	A	V	I	A	N	A	Q	S	K	V	L	I	V
Query Conservation																					.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation
Template Sequence		L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R	L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R	I	H	R	M	R	S	L	L	H	A	S	L	A	K	R	K	T	P	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	T
Template Known Secondary structure						T	T	T	S	S														T	S																																T	T				S	T	T	T	T			T							S	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		E	F	H	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	.	.	.	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S
Query Conservation																																																														.	.	.
Alig confidence						.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Template Conservation						.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	T	P	.	.	.	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	S	M	C	G	L	T	E	S	N	C	D	Y	V	A	E	A	I	H	D	A	V	T	K
Template Known Secondary structure						.	.	.															B	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G				G	G	G			T	T	T
Template Predicted Secondary structure						.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		375	.	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.																														.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		361
Predicted Secondary structure
Query SS confidence
Query Sequence		I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		423

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions