Job Description P45545 Confidence 99.93% Date Thu Jan 5 12:03:04 GMT 2012 Rank 153 Aligned Residues 335 % Identity 14% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.								.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.																																							.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.																																							.	.	.	.
Query Sequence		M	K	T	F	P	L	Q	S	L	T	I	I	E	A	Q	Q	K	Q	F	A	L	V	D	S	I	C	R	.	.	.	.	.	.	.	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	.	.	.	.	Q	A	A	A
Query Conservation																													.	.	.	.	.	.	.																																							.	.	.	.
Alig confidence																													.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation
Template Sequence		G	I	K	K	P	F	T	E	V	I	R	A	N	P	I	T	F	L	R	Q	V	M	A	L	C	T	Y	P	N	L	L	D	S	P	S	F	P	E	D	A	K	K	R	A	R	R	I	L	Q	A	C	S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I
Template Known Secondary structure		T				S	S	S	S		B																		G	G	G	G	G		S	S	S																		S																T	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.					.	.
Predicted Secondary structure																									.	.	.	.																														.	.	.	.	.	.	.												.	.	.	.
Query SS confidence																									.	.	.	.																														.	.	.	.	.	.	.												.	.	.	.
Query Sequence		L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	L	K	P	G	Q	R	.	.	.	.	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	.	.	.	.	.	.	.	D	L	S	A	L	K	Q	V	V	D	E	.	.	.	.	Q	Q
Query Conservation																									.	.	.	.																														.	.	.	.	.	.	.												.	.	.	.
Alig confidence																									.	.	.	.				.																										.	.	.	.	.	.	.												.	.	.	.
Template Conservation																																.
Template Sequence		Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	.	P	I	P	Q	Y	P	L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D
Template Known Secondary structure					S	S																	G	G	G	S						.			S			T									T	T									B	G	G	G	T	T	B														T	T	T	S
Template Predicted Secondary structure																																.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.																	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																						.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	L	A	.	.	.	D	V	L	A	T	L	R	A	A	G	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E	C	G	A	N	V	S	T	F	S	C	F
Query Conservation																						.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S
Template Known Secondary structure									S	S		T	T	T																				T								T	T	T	T		B			T	T													T						T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		196	.	.	.				200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.														.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure						.	.	.										.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.										.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	F	G	.	.	.	P	E	G	V	G	A	V	V	G	.	.	.	D	A	D	V	I	N	R	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	L	V	F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L
Query Conservation						.	.	.										.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.										.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T
Template Known Secondary structure		S	S	T	T			S	S	S									S																S															T					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.															.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																										.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	.	L	I	V	E	F	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R
Query Conservation																										.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.														.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Template Conservation								.	.	.	.	.																																																																.	.	.	.	.	.
Template Sequence		E	D	L	F	N	Q	.	.	.	.	.	V	P	G	I	H	C	N	P	L	Q	G	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	.	.	.	.	.	.
Template Known Secondary structure							T	.	.	.	.	.	S	T	T								B	S	S																			T	T	S																B					G	G	G	T				T	T	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.																																																																.	.	.	.	.	.
Template SS confidence
		421	.	.	.	.	.						.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	.	.	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S
Query Conservation																									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	H	F	R	M	T	I	L	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H	I	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.			B							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.