Job Description P45545 Confidence 99.95% Date Thu Jan 5 12:03:04 GMT 2012 Rank 125 Aligned Residues 308 % Identity 13% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																								.	.	.	.	.	.	.	.																				.
Query SS confidence																												.	.	.																								.	.	.	.	.	.	.	.																				.
Query Sequence		G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	.	.	.	A	A	A	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	L	K	P	.	.	.	.	.	.	.	.	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	.
Query Conservation																												.	.	.																								.	.	.	.	.	.	.	.																				.
Alig confidence																												.	.	.																								.	.	.	.	.	.	.	.							.													.
Template Conservation																																																																				.
Template Sequence		N	Y	S	N	P	Q	G	D	S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	N	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	.	L	T	P	E	Y	I	G	Y	S	D	V	H	V
Template Known Secondary structure		S				T	T																							G	G	G					S	S													S																S	.	S	S	S			G	G	G	T	T			S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.
							109	110	.	.	.	.	.	.	.	.	.	120	.											.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.											.	.																						.	.	.
Query SS confidence		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.											.	.																						.	.	.
Query Sequence		.	.	.	.	.	E	Q	M	G	L	T	L	I	T	V	D	F	N	.	.	.	.	.	.	.	.	.	.	D	L	S	A	L	K	Q	V	V	D	.	.	E	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	.	.	.	L	A	D	V	L	A	T	L	R	A	A	G	V	P	A	L
Query Conservation		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.											.	.																						.	.	.
Alig confidence		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.											.	.																						.	.	.
Template Conservation
Template Sequence		E	G	Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E	A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I
Template Known Secondary structure		S	S																T	T																T						T	T									S	S		T	T	T																			T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		169	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure							.	.	.	.	.																													.
Query SS confidence							.	.	.	.	.																													.
Query Sequence		T	D	D	N	Y	.	.	.	.	.	A	V	M	K	V	A	R	I	G	C	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	.	G	V	G	A	V	V	G	D	A	D	V	I	N	R	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	A
Query Conservation							.	.	.	.	.																													.
Alig confidence							.	.	.	.	.																													.
Template Conservation
Template Sequence		I	D	N	A	Y	G	X	P	F	P	N	I	I	Y	S	D	A	H	L	N	W	D	N	N	T	I	L	C	F	S	L	S	K	I	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A	N	D
Template Known Secondary structure					T	T		T	T	T	T			B		S								T	T							S	G	G	G	T		G	G	G																							T	S	S															T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.												.							.	.
Query SS confidence																													.	.	.	.	.												.							.	.
Query Sequence		P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	.	.	.	.	.	S	A	V	I	A	N	A	Q	S	K	V	.	L	I	V	E	F	H	.	.	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E
Query Conservation																													.	.	.	.	.												.							.	.
Alig confidence																													.	.	.	.	.												.							.	.
Template Conservation
Template Sequence		R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V	K	L	L	K	Q	A	L	G	D	Y	P	L	X	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V
Template Known Secondary structure										T																				S	S	S	S	S								B	S	S							T	T		S	S												T	T						G	G	G	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	.	.	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation																																.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	S	D	Y	Q	H	A	.	.	.	.	.	.	.	.	.	.	.	.	H	E	C	I	R	X	S	I	A	A	D	E	Q	T	L	I	D	G	I	K	V	I	G	E	V	V	R	E	L
Template Known Secondary structure				T	T		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	G	S						S		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		403	.	.	.	.	.	.	410													.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions