Job Description P45545 Confidence 99.92% Date Thu Jan 5 12:03:04 GMT 2012 Rank 171 Aligned Residues 337 % Identity 10% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.
Query Sequence		M	K	T	F	P	L	Q	S	L	T	I	I	E	A	Q	Q	K	Q	F	A	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	A	A	A	.	.	.	.	.	.	L	V	Q	G	A
Query Conservation																																																																							.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		L	D	G	N	P	R	L	N	L	A	S	F	V	T	T	W	M	E	P	E	C	D	K	L	I	M	S	S	I	N	K	N	Y	.	.	.	.	.	.	V	D	M	D	E	Y	P	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G
Template Known Secondary structure		G	S			G	G	G	B	T	T			S															T	T	T		B	T	.	.	.	.	.	.	T		T	T	T																			T	T					T	T									S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.														.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Query Sequence		G	T	G	A	I	R	A	G	L	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	K	P	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	D	L	S	.	.	.	.	.	A	L	K	Q	V	V	D	E	Q	Q	P	D
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.																					.																			.	.	.	.	.
Template Conservation																																														.
Template Sequence		S	S	E	A	I	M	L	A	G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	W	E	K	.	F	A	R	Y	F	E	V	E	L	K	E	V	K	L	S	E	G	Y	Y	V	M	D	P	Q	Q	A	V	D	M	V	D	E	N	T	I
Template Known Secondary structure																								T	T				S								T	T								.					T	T									B	T	T	B		S												T	T
Template Predicted Secondary structure																																														.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.								180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.																.	.	.	.	.	.	.
Query Sequence		A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	L	A	D	V	L	A	T	L	R	A	A	G	.	.	.	.	.	.	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	.	.	.	.	.	.	.	R	I	G	C	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	V
Query Conservation																														.	.	.	.	.	.																.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	V	A	A	I	L	G	S	T	L	N	G	E	F	E	D	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	D	F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	V	Y	A	G	I
Template Known Secondary structure							B	S		T	T	T			B																												T	T	G	G	G	T						S	S				S	T	T	S	T	T															S	S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.															.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	V	V	G	D	A	D	V	I	N	R	I	R	A	T	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		G	W	V	I	W	R	N	K	.	.	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A	Q	Y	Y	Q	L	I	R	L	G	H	E	G	Y	R	N	V	M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	E	R
Template Known Secondary structure							S	S	G	.	.	G	G	S		G	G	G						S	S	S	S							S			S		B	S																																						T	T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		286	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure											.												.	.	.
Query SS confidence											.												.	.	.
Query Sequence		S	A	V	I	A	N	A	Q	S	.	K	V	L	I	V	E	F	H	Q	P	I	.	.	.	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	S
Query Conservation											.												.	.	.
Alig confidence											.												.	.	.																.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	N	I	V	S	K	D	E	G	V	P	L	V	A	F	S	L	K	D	S	S	C	H	T	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	.	P	A	Y	T	M	P	P	N	A	Q	H	I	T	V	L	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	R	E	D	F	S	R	T
Template Known Secondary structure						S		S	S	S	S	S							S	S		S	S												T	T	T		B		.							T	T		T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure																																									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.															420	.	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	E	R	L	V	I	D	I	E	K	V	M	R	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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