Job Description P45545 Confidence 99.95% Date Thu Jan 5 12:03:04 GMT 2012 Rank 121 Aligned Residues 328 % Identity 12% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																					.	.	.
Query SS confidence															.																																																					.	.	.
Query Sequence		K	T	F	P	L	Q	S	L	T	I	I	E	A	.	Q	Q	K	Q	F	A	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	.	.	.	A	A	A	L	V	Q	G	A	G	T	G
Query Conservation															.																																																					.	.	.
Alig confidence															.													.	.	.	.	.																																				.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		T	G	T	K	F	C	R	X	E	X	G	V	P	G	L	P	A	P	Q	I	G	I	E	T	E	I	.	.	.	.	.	Q	K	L	R	E	G	V	A	S	I	Y	P	N	L	D	G	L	P	E	L	K	Q	E	A	S	R	F	A	K	L	F	V	N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q
Template Known Secondary structure			T										S			S												.	.	.	.	.						T	G	G	G	S				T	T																							G	G	G					S
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.																															.	.	.	.	.	.
Query SS confidence																	.	.	.	.																															.	.	.	.	.	.
Query Sequence		A	I	R	A	G	L	A	A	L	L	K	P	G	Q	R	.	.	.	.	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	D	.	.	.	.	.	.	L	S	A	L	K	Q	V	V	D	E	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P
Query Conservation																	.	.	.	.																															.	.	.	.	.	.
Alig confidence																	.	.	.	.						.																									.	.	.	.	.	.
Template Conservation																										.
Template Sequence		G	C	F	V	S	F	L	V	A	N	R	T	H	K	N	R	E	Y	G	T	L	F	I	D	.	P	G	F	N	L	N	K	L	Q	C	R	I	L	G	Q	K	F	E	S	F	D	L	F	E	Y	R	G	E	K	L	R	E	K	L	E	S	Y	L	Q	T	G	Q	F	C	S	I	I	Y	S	N	P	N	N	P	T
Template Known Secondary structure											T	T	S		T	T		S								.	S													T								G	G	G	G		T	T											T	T	T									S	S		T	T	T
Template Predicted Secondary structure																										.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		148	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210
Predicted Secondary structure							.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query SS confidence							.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Query Sequence		Q	D	S	Y	V	.	.	.	L	A	D	V	L	A	T	L	R	A	A	G	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	.	.	.	.	.	.	.	.	.	.	.	.	I	G	C	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	.	.	V	G	A	V	V	G	D	A
Query Conservation							.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Alig confidence							.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		W	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y	S	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T	D	N	Y	I	L	A	L	S	S	S	A	F	S	Y	A	G	Q	R	I	G	V	L	X	I	S	G
Template Known Secondary structure																				T	T								T	T	T	T			T	T	S				S	T	T	S	S						G	G	G	T		S												S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		211	.	.	.	.																			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.								.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Query Sequence		D	V	I	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	A	P	V	.	.	.	.	.	.	.	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	Y	E	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H	S	A	Q	W	G	X	A	A	X	L	K	A	C	N	D	G	E	Y	N	F	R	D	S	V	I	E	Y	G	R	K	A	R	I	X	K	K	X	F	L	D	N	G	F
Template Known Secondary structure							B		G	G	G					S		S	B							T	T							S	S	S																	T	T	S																							T	T	T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																.	.																							.
Query SS confidence																.	.																							.
Query Sequence		P	E	V	K	S	A	V	I	A	N	A	Q	S	K	.	.	V	L	I	V	E	F	H	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	G	.	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P
Query Conservation																.	.																							.
Alig confidence																.	.																							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	K	G	X	D	S	S	K	L	I	E	K	F	V	R	Y	G	X	C	A	I	T	L	K	T	T	G	S	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	A	X	R	I	C	T
Template Known Secondary structure				S	S				T	T					S	S	S							T	T													T	T						S	T	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.																						.	.	.	410	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	S	G	E	E	T	V	L	R	I	L	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	L	P	E	S	Q	F	P	D	L	E	K	R
Template Known Secondary structure		S	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions