Job Description P45545 Confidence 99.87% Date Thu Jan 5 12:03:04 GMT 2012 Rank 202 Aligned Residues 300 % Identity 12% Template c3f6tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution Resolution 2.15 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	.	.	.	.	.	.	Q	A	A	A	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	.	.	.	.	.	L	K	P	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T	T	R	V
Query Conservation																														.	.	.	.	.	.																						.	.	.	.	.
Alig confidence																														.	.	.	.	.	.																						.	.	.	.	.										.
Template Conservation																																																																							.
Template Sequence		A	N	N	Y	P	V	P	D	R	C	L	V	N	T	E	K	I	I	N	Y	F	L	Q	E	L	S	Y	K	D	A	N	L	A	E	Q	T	D	L	F	P	T	E	G	G	T	A	A	I	V	Y	A	F	H	S	L	A	E	N	H	L	L	K	K	G	D	K	I	A	I	.	N	E	P	I	F	T	P	Y	L	R
Template Known Secondary structure		T		S			S	S	S	S																		T	T	T				G	G	G																							T	T	S	S		T	T						.		S	S							T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																	.	.	.												.
Query SS confidence																.	.	.	.	.	.	.	.	.																																	.	.	.												.
Query Sequence		I	I	E	Q	M	G	L	T	L	I	T	V	D	F	.	.	.	.	.	.	.	.	.	N	D	L	S	A	L	K	Q	V	V	D	E	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	.	.	.	L	A	D	V	L	A	T	L	R	A	A	.	G	V	P	A	L	T	D	D	N	Y
Query Conservation																.	.	.	.	.	.	.	.	.																																	.	.	.												.
Alig confidence																.	.	.	.	.	.	.	.	.											.																						.	.	.												.
Template Conservation																																			.
Template Sequence		I	P	E	L	K	D	Y	E	L	V	E	V	D	L	H	S	Y	E	K	N	D	W	E	I	E	P	N	E	I	E	K	L	K	.	D	P	S	I	K	A	L	I	V	V	N	P	T	N	P	T	S	K	E	F	D	T	N	A	L	N	A	I	K	Q	A	V	E	K	N	P	K	L	X	I	I	S	D	E	V	Y
Template Known Secondary structure		S	G	G	G	G	G	S											T	T	T	T	S											S	.		T	T								S	S		T	T	T		B																		T	T								T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																	.	.	.														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	M	K	V	A	R	I	G	C	E	C	G	A	N	.	.	.	V	S	T	F	S	C	F	K	L	F	G	P	E	.	G	V	G	A	V	V	G	D	A	D	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	F	V	P	N	F	K	S	I	Y	S	V	V	P	Y	N	T	X	L	V	Y	S	Y	S	L	F	G	C	T	G	W	R	L	G	V	I	A	L	N	E	K	N	V	F	D	D	N	I	A	H	L	D	K	V	E	L	R	Q	L	H	K	R	Y	S	S	V	V	L	D	P	D	K	X	K	F	I	D	R	L
Template Known Secondary structure		G	G	G	S	T	T								S	G	G	G											S		G	G	G									S	S									T	S														T	T		S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
			214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.								.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.
Predicted Secondary structure		.																																	.	.	.	.	.	.	.																																				.
Query SS confidence		.																																	.	.	.	.	.	.	.																																				.
Query Sequence		.	N	R	I	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	A	P	V	M	.	.	.	.	.	.	.	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	.	L	I	V	E
Query Conservation		.																																	.	.	.	.	.	.	.																																				.
Alig confidence		.																																	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		C	A	D	S	R	S	I	G	L	Y	H	T	A	G	L	S	T	P	Q	Q	I	X	E	A	L	F	S	X	T	H	L	L	T	S	T	N	G	G	S	D	D	P	Y	I	D	I	A	R	K	L	V	S	E	R	Y	D	Q	L	H	D	A	X	Q	A	P	K	D	E	T	D	T	N	T	H	Y	Y	S	L	I	D
Template Known Secondary structure						T	T	T	T	T	G	G	G		S																		T	T		B	G	G	G	T	B																							T						S	T	T	B			S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		285	.																		.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence		F	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	I	A	A	R	V	L	E	E	A	Q	K	R	.	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	S	G
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	R	L	A	E	K	I	Y	G	K	E	F	R	D	Y	L	T	N	N	F	E	Q	V	D	F	L	L	K	L	A	E	K	N	G	V	V	L	V	D	G	V	G	F	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	E	L	R	V	S	Q	A	N	L	P
Template Known Secondary structure																																			T	T	S	S	S		T	T					S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S	S	S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.																						.	.	.	.	.	500	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	T	E	D	Y	A	L	I	G	K	Q	V	L	E	L
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			507	.	.	510	.	.	.	.	.	.	.	.	.	520

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions