Job Description P45545 Confidence 99.96% Date Thu Jan 5 12:03:04 GMT 2012 Rank 77 Aligned Residues 315 % Identity 13% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		Q	F	A	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	.	.	.	A	A	A	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	L	K	P	G	Q	R	L	L
Query Conservation																																																			.	.	.
Alig confidence											.	.	.	.	.	.											.	.																							.	.	.
Template Conservation											.	.	.	.	.	.											.	.
Template Sequence		A	P	E	I	X	A	S	X	E	.	.	.	.	.	.	E	K	L	K	V	A	A	F	G	Y	.	.	E	S	V	P	A	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H	R	A	R	P	K	E	D	W	C	V	F	A	S	G	V	V	P	A	I	S	A	X	V	R	Q	F	T	S	P	G	D	Q	I	L
Template Known Secondary structure											.	.	.	.	.	.				T	T						.	.																				S					G	G	G					S														S		T	T
Template Predicted Secondary structure											.	.	.	.	.	.											.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120									.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.																																	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.																																	.	.	.
Query Sequence		V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	.	.	.	.	.	.	.	.	N	D	L	S	A	L	K	Q	V	V	D	E	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	.	.	.	L	A	D	V	L	A	T	L	R	A	A
Query Conservation																												.	.	.	.	.	.	.	.																																	.	.	.
Alig confidence			.																									.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation			.
Template Sequence		V	.	Q	E	P	V	Y	N	X	F	Y	S	V	I	E	G	N	G	R	R	V	I	S	S	D	L	I	Y	E	N	S	K	Y	S	V	N	W	A	D	L	E	E	K	L	A	T	P	S	V	R	X	X	V	F	C	N	P	H	N	P	I	G	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H
Template Known Secondary structure			.		S	S			T								T	T	T												T	T														T	S	T	T								S	S	B	T	T	T	T	B																	T
Template Predicted Secondary structure			.
Template SS confidence
		113		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.																			.	.															.	.
Query SS confidence																							.	.	.	.	.	.	.	.																			.	.															.	.
Query Sequence		G	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	I	G	C	E	.	.	.	.	.	.	.	.	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	.	.	V	G	A	V	V	G	D	A	D	V	I	N	R	I	.	.	R	A	T	L	Y	S	G	G	S	Q	I	Q	G	A	Q
Query Conservation																							.	.	.	.	.	.	.	.																			.	.															.	.
Alig confidence																							.	.	.	.	.	.	.	.																			.	.															.	.
Template Conservation
Template Sequence		Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	I	T	P	A	F	T	V	D	W	D	A	K	N	W	V	V	S	L	I	S	P	S	T	F	N	L	A	A	L	H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	A	E	E	S	F	F	L	A	G	I	G	E	P	N	L	L	A
Template Known Secondary structure		T								T	T	G	G	G	B		S	S						G	G	G	S		T	T	G	G	G	G											S		G	G	G									S															T		S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.									.	.										.
Query SS confidence																																																			.									.	.										.
Query Sequence		A	L	E	V	L	R	G	L	V	F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	.	L	I	V	E	F	H	Q	P	.	.	I	A	A	R	V	L	E	E	A	.	Q	K	R	G	A	L	P	Y	P	V
Query Conservation																																																			.									.	.										.
Alig confidence																																																			.									.	.										.
Template Conservation
Template Sequence		I	P	A	A	I	A	A	Y	E	E	G	H	D	W	L	R	E	L	K	Q	V	L	R	D	N	F	A	Y	A	R	E	F	L	A	K	E	V	P	E	V	K	V	L	D	S	N	A	S	Y	L	A	W	V	D	I	S	A	L	G	X	N	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G
Template Known Secondary structure																																							T	T	S						S	B	S	S							G	G	G		S																				G
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	.	.	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation																																							.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	G	Y	R	G	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	F	V	R	I	N	L	A	C	P	K	E	L	V	I	D	G	X	Q	R	L	K	Q	G	V	L	N	L
Template Known Secondary structure		G	G	G		T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G								S																		T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.																					360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions