Job Description P45545 Confidence 99.87% Date Thu Jan 5 12:03:04 GMT 2012 Rank 207 Aligned Residues 305 % Identity 14% Template c3dodA_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis Resolution 1.90 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.								.	.	.	.	.	.	90	.
Predicted Secondary structure																																																	.																		.	.	.	.	.	.	.
Query SS confidence																																																	.																		.	.	.	.	.	.	.
Query Sequence		A	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	.	A	A	A	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	.	.	.	.	.	.	.	A	A	L	L	K	P	G	Q
Query Conservation																																																	.																		.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																											.																		.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.
Template Sequence		E	L	D	D	A	I	K	K	Q	L	G	K	I	A	.	.	.	.	.	.	.	H	S	T	L	L	G	M	T	N	V	P	A	T	Q	L	A	E	T	L	I	D	I	S	P	K	K	L	T	R	V	F	Y	S	D	S	G	A	E	A	M	E	I	A	L	K	M	A	F	Q	Y	W	K	N	I	G	K	P	E	K
Template Known Secondary structure												T	T		S	.	.	.	.	.	.	.					S	S	S																S		T	T								S	S																			T	T		T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.								.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																										.	.												.											.	.	.	.
Query SS confidence																																										.	.												.											.	.	.	.
Query Sequence		R	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	D	L	S	A	L	K	Q	V	V	D	.	.	E	Q	Q	P	D	A	A	L	V	Q	H	.	T	R	Q	Q	P	Q	D	S	Y	V	.	.	.	.	L	A	D	V	L	A	T	L	R	A	A	G
Query Conservation																																										.	.												.											.	.	.	.
Alig confidence																																										.	.												.											.	.	.	.
Template Conservation
Template Sequence		Q	K	F	I	A	M	K	S	Y	K	A	P	I	P	Y	V	Y	R	S	E	S	G	D	P	D	E	C	R	D	Q	C	L	R	E	L	A	Q	L	L	E	E	H	H	E	E	I	A	A	L	S	I	E	S	M	V	Q	G	A	S	G	M	I	V	M	P	E	G	Y	L	A	G	V	R	E	L	C	T	T	Y	D
Template Known Secondary structure																		T	T	S	S	S																						G	G	G								S	S			S	T	T	T						T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.	230	.	.
Predicted Secondary structure															.	.	.	.	.																																															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.																																															.	.	.	.	.	.	.
Query Sequence		V	P	A	L	T	D	D	N	Y	A	V	M	K	.	.	.	.	.	V	A	R	I	G	C	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	V	G	A	V	V	G	D	A	D	V	I	N	R	I	R	A	T	L	Y	S	G	.	.	.	.	.	.	.	G	S	Q	I	Q	G	A	Q	A
Query Conservation															.	.	.	.	.																																															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.																																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	M	I	V	D	E	V	A	T	G	F	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	L	M	A	A	G	K	G	I	T	G	G	Y	L	P	I	A	V	T	F	A	T	E	D	I	Y	K	A	F	Y	D	D	Y	E	N	L	K	T	F	F	H	G	H	S	Y	T	G	N	Q	L	G	C
Template Known Secondary structure									T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S						G	G	G	G	T	T	S	S														T	T		S		G	G	G									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.													.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	V	L	R	G	L	V	F	A	P	V	.	.	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	L	I	V	E	F	H	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	I	A	A	R	V	L	E	E	A	Q
Query Conservation														.	.																																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																							.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.
Template Sequence		A	V	A	L	E	N	L	A	L	F	E	S	E	N	I	V	E	Q	V	A	E	K	S	K	K	L	H	F	L	L	Q	D	L	H	A	L	.	.	P	H	V	G	D	I	R	Q	L	G	F	M	C	G	A	E	L	V	R	S	K	E	T	K	E	P	Y	P	A	D	R	R	I	G	Y	K	V	S	L	K	M	R
Template Known Secondary structure														T	T																				T	T	S	.	.	T	T								T	T								S	B	T	T	T	T	B				G	G	G
Template Predicted Secondary structure																																						.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	G	M	L	T	R	P	L	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	F	L	P	P	L	A	S	T	A	E	E	L	S	E	M	V	A	I	M	K	Q
Template Known Secondary structure			T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.																												.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions