Phyre 2 alignment of P45545 with c3a2bA

Job Description P45545
Confidence 99.97% Date Thu Jan 5 12:03:04 GMT 2012

Rank 58 Aligned Residues 314

% Identity 14% Template c3a2bA_

PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	V	D	S	I	C	R	H	F	P	G	S	E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	A	A	A	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	L	K	P	G	Q	R	L	L	V	H	D	A	P
Query Conservation
Alig confidence											.	.	.																																			.
Template Conservation											.	.	.																																			.
Template Sequence	R	I	I	K	A	A	Q	D	A	L	.	.	.	E	K	Y	G	T	G	C	A	G	S	R	F	L	N	G	T	L	D	I	H	V	E	L	E	E	K	L	S	A	Y	V	G	K	E	.	A	A	I	L	F	S	T	G	F	Q	S	N	L	G	P	L	S	C	L	M	G	R	N	D	Y	I	L	L	D	E	R	D
Template Known Secondary structure											.	.	.					S				S	B	T	T	T	T																		T		S	.						S	S												S	S		T	T							T	T
Template Predicted Secondary structure											.	.	.																																			.
Template SS confidence
	62	.	.	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V	D	F	N	D	L	S	A	L	K	Q	V	V	D	.	.	.	E	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	L	A	D	V	L	A	T	L	R	A	A	G	V	P	A	L	T	D	D	N	Y	A	V	M
Query Conservation																																	.	.	.
Alig confidence							.																										.	.	.
Template Conservation							.
Template Sequence	H	A	S	I	I	D	.	G	S	R	L	S	F	S	K	V	I	K	Y	G	H	N	N	M	E	D	L	R	A	K	L	S	R	L	P	E	D	S	A	K	L	I	C	T	D	G	I	F	S	M	E	G	D	I	V	N	L	P	E	L	T	S	I	A	N	E	F	D	A	A	V	M	V	D	D	A	H	S	L	G
Template Known Secondary structure							.					S	S	S							T	T											T	S		S	S	S								S	B		T	T	T			B														T								T	T	T	T	T
Template Predicted Secondary structure							.
Template SS confidence
	138	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

	177	.									.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.																																												.	.
Query SS confidence			.	.	.	.	.	.	.	.																																												.	.
Query Sequence	K	V	.	.	.	.	.	.	.	.	A	R	I	G	C	E	C	G	A	N	V	S	T	F	S	C	F	K	L	F	G	P	E	G	V	G	A	V	V	G	D	A	D	V	I	N	R	I	R	A	T	L	Y	.	.	S	G	G	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	A	P	V	M	H
Query Conservation			.	.	.	.	.	.	.	.																																												.	.
Alig confidence			.	.	.	.	.	.	.	.																									.																			.	.
Template Conservation																																			.
Template Sequence	V	I	G	H	K	G	A	G	T	A	S	H	F	G	L	N	D	D	V	D	L	I	M	G	T	F	S	K	S	L	A	S	L	G	.	G	F	V	A	G	D	A	D	V	I	D	F	L	K	H	N	A	R	S	V	M	F	S	A	S	M	T	P	A	S	V	A	S	T	L	K	A	L	E	I	I	Q	N	E	P
Template Known Secondary structure	T	S	S	G	G	G								T		G	G	G		S						S	S	S	T	T		S	S		.																						S	S	B																					T
Template Predicted Secondary structure																																			.
Template SS confidence
	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	L	I	V	E	F	H	Q	P	I	.	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T
Query Conservation																																												.
Alig confidence																								.	.	.																		.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																																													.	.	.	.	.	.	.	.	.	.
Template Sequence	E	H	I	E	K	L	W	K	N	T	D	Y	A	K	A	Q	L	L	D	H	G	F	D	.	.	.	L	G	A	T	E	S	P	I	L	P	I	F	I	R	S	N	E	K	T	F	W	V	T	K	M	L	Q	D	D	G	V	F	V	N	P	V	V	S	P	A	V	P	A	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																				T	T			.	.	.	B		S			S	S																						T	T								T	T	T	S		G	G	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.																																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	E	S	L	I	R	F	S	L	M	A	T	H	T	Y	D	Q	I	D	E	A	I	E	K	M	V	K	V
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	G									T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.
Template SS confidence
										363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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