 |
Job Description | P45545 | Confidence | 20.96% | Date | Thu Jan 5 12:03:04 GMT 2012 |
Rank | 369 | Aligned Residues | 119 |
% Identity | 11% | Template | c3a11D_ |
PDB info |
PDB header:isomerase | Chain: D: PDB Molecule:translation initiation factor eif-2b, delta |
PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1
|
Resolution | 2.50 Å |
|
 |
  |   |
51 | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | Q | R | V | E | Q | V | L | A | D | A | F | H | A | Q | A | A | A | L | V | Q | G | A | G | T | G | A | I | R | A | G | L | A | A | L | L | K | . |
P | G | Q | R | L | L | V | H | D | A | P | V | Y | P | T | T | R | V | I | I | E | Q | M | G | L | T | L | I | T | V | D | F | N | D | L | S | A | L | K | Q | V |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|
|   |   |   |
|
|   |   |   |   |
|
|   |   |
|
|
|   |
|
|   |   |
|
|   |   |   |   |   | . |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|   |
|   |
|   |
|   |
|
|
|
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |
|   |
|
|
|
|   |   |   |
Template Sequence |   |
A | L | E | R | I | G | E | F | G | A | K | R | I | E | D | G | D | V | I | M | T | H | C | H | S | K | A | A | I | S | V | M | K | T | A | W | E | Q | G | K | D | I | K | V | I | V | T | E | T | R | P | K | W | Q | G | K | I | T | A | K | E | L | A | S | Y | G | I | P | V | I | Y | V | V | D | S | A | A | R | H | Y |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
|
| T | T |
|  |  |  |  |
| S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
|
| T | T | T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| G | G | G | T | T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
111 | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
  |
  |   |
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | |
|
. | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | D | E | Q | Q | P | D | A | A | L | V | Q | H | T | R | Q | Q | P | Q | D | S | Y | V | L | A | . |
. |
D | V | L | A | T | L | R | A | A | G | V | P | A | L | T |
Query Conservation |   |
  |   |   |   |   |
|   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   | . | . |   |
|   |   |   |
|   |   |   |
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|
|
|
|
|   |
|   |   |
|
|   |
|   |
|
|   |
|
|   |   |
|
|
|   |
|
|   |   |   |
|
|
|   |
|
Template Sequence |   |
M | K | M | T | D | K | V | V | M | G | A | D | S | I | T | V | N | G | A | V | I | N | K | I | G | T | A | L | I | A | L | T | A | K | E | H | R | V | W | T | M | I |
Template Known Secondary structure |   |
G | G | G |
| S |  |  |  |  |
|
| S |  |  |
| T | T |
|
|  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|