Return to main results Retrieve Phyre Job Id

Job DescriptionP45545
Confidence20.96%DateThu Jan 5 12:03:04 GMT 2012
Rank369Aligned Residues119
% Identity11%Templatec3a11D_
PDB info PDB header:isomeraseChain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70.........80........ .90.........100.........110.........120.........
Predicted Secondary structure 









.












Query SS confidence 





































.








































Query Sequence  VTQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLK. PGQRLLVHDAPVYPTTRVIIEQMGLTLITVDFNDLSALKQV
Query Conservation       
  

   

    

  


 

  

     . 

 

                 
     
   
   
   
Alig confidence 





































.








































Template Conservation 
   
       
     


   
 

   
  
   

 
 
 
 



  

   
  
   

 

 
 



   
Template Sequence  ALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHY
Template Known Secondary structure  TT

TT

S

TT




TTTTTT


GGGTTTT
Template Predicted Secondary structure 






















Template SS confidence 















































































   111........120.........130.........140.........150.........160.........170.........180.........190
 
   130.........140.........150.... .....160.........
Predicted Secondary structure 














..


Query SS confidence 
























. .














Query Sequence  VDEQQPDAALVQHTRQQPQDSYVLA. . DVLATLRAAGVPALT
Query Conservation       
 

      
  
   

 .. 
   
   
  


Alig confidence 
























..














Template Conservation 
  

 





 
  

 
 

 

  


 

   


 
Template Sequence  MKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMI
Template Known Secondary structure  GGG
S

S
TT

TTTT
Template Predicted Secondary structure 















Template SS confidence 









































   191........200.........210.........220.........230..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions