Job Description P45545 Confidence 99.84% Date Thu Jan 5 12:03:04 GMT 2012 Rank 220 Aligned Residues 298 % Identity 17% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.							.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.							.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	L	T	G	G	D	L	G	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	.	.	.	.	L	A	D	A	F	H	.	.	A	Q	A	A	A	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.							.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.							.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	X	I	A	A	L	N	Q	S	X	D	S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D
Template Known Secondary structure												T	T		G	G	G																			T	T			T	T							S	S																														S		T
Template Predicted Secondary structure
Template SS confidence
		580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																													.	.	.									.	.	.	.	.														.	.	.	.	.
Query SS confidence																													.	.	.									.	.	.	.	.														.	.	.	.	.
Query Sequence		L	K	P	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T	T	R	V	I	I	E	Q	M	G	L	.	.	.	T	L	I	T	V	D	F	N	.	.	.	.	.	D	L	S	A	L	K	Q	V	V	D	E	Q	Q	.	.	.	.	.	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	L
Query Conservation																													.	.	.									.	.	.	.	.														.	.	.	.	.
Alig confidence																					.								.	.	.									.	.	.	.	.														.	.	.	.	.
Template Conservation																					.
Template Sequence		Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	V	Q	K	.	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V	D	A	N	A	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	L
Template Known Secondary structure		T	G	G	G							T	T	S		T					.					T	T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T			B
Template Predicted Secondary structure																					.
Template SS confidence
		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.		.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.															.
Query SS confidence																																		.	.	.	.	.															.
Query Sequence		A	D	V	L	A	T	L	R	A	A	G	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	I	G	C	E	C	.	.	.	.	.	G	A	N	V	S	T	F	S	C	F	K	L	F	G	.	P	E	G	V	G	A	V	V	G	D	A	D	V	I	N	R	I	R	A	T	L	Y	S	G	G	S	Q	I
Query Conservation																																		.	.	.	.	.															.
Alig confidence																																		.	.	.	.	.															.												.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		D	F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	K	G	V	E	R	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L	V	N	D	.	.	.	.	.	.	K	S	N	F	K	F	L	L	K	R	F
Template Known Secondary structure												T								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	T	T	G	G	G		S						T	T	S	T	T				S	S							S		.	.	.	.	.	.	G	G	G	G	G	G	G
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		739	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.							.	.	.	.	.	.	.	.	810	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290							.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		Q	G	A	Q	A	L	E	V	L	R	G	L	V	F	A	P	V	M	H	A	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	L	I	V	E	F	H	Q	P	I	A	.	.	.	.	.	.	A	R	V	L	E	E	A	Q	K	R	G
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence																		.	.																																														.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence		D	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	A	.	.	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P	S	L	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G
Template Known Secondary structure		T											T					.	.																					T		T	T					S			S	S	S									S	S	S																	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		837	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.			.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	.	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation																																												.
Alig confidence					.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation					.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	V	.	.	.	.	.	.	.	.	.	.	L	G	E	T	I	V	D	G	.	.	.	.	.	.	.	.	.	.	.	.	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L
Template Known Secondary structure		S		B	.	.	.	.	.	.	.	.	.	.							T	T	.	.	.	.	.	.	.	.	.	.	.	.											T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		915	.	.											.	.	920	.	.	.	.	.													.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions