Phyre 2 alignment of P45545 with c2dr1A

Job Description P45545
Confidence 99.95% Date Thu Jan 5 12:03:04 GMT 2012

Rank 127 Aligned Residues 296

% Identity 13% Template c2dr1A_

PDB info PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.																																				.
Query SS confidence																												.	.																																				.
Query Sequence	L	T	P	G	L	N	Q	P	R	V	T	Q	R	V	E	Q	V	L	A	D	A	F	H	A	Q	A	A	.	.	A	L	V	Q	G	A	G	T	G	A	I	R	A	G	L	A	A	L	L	K	P	G	Q	R	L	L	V	H	D	A	P	V	Y	P	T	.	T	R	V	I	I	E	Q	M	G	L	T	L	I	T	V
Query Conservation																												.	.																																				.
Alig confidence																												.	.																																				.
Template Conservation
Template Sequence	S	H	R	S	K	E	Y	R	K	V	H	M	D	T	V	E	R	L	R	E	F	L	E	V	E	K	G	E	V	L	L	V	P	S	S	G	T	G	I	M	E	A	S	I	R	N	G	V	S	K	G	G	K	V	L	V	T	I	I	G	A	F	G	K	R	Y	K	E	V	V	E	S	N	G	R	K	A	V	V	L
Template Known Secondary structure		T	T	S																			T		S	S	S						S	S														S		T	T								S	S													T	T
Template Predicted Secondary structure
Template SS confidence
	45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.

	119	120	.						.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure				.	.	.	.	.											.
Query SS confidence				.	.	.	.	.											.
Query Sequence	D	F	N	.	.	.	.	.	D	L	S	A	L	K	Q	V	V	D	.	E	Q	Q	P	D	A	A	L	V	Q	H	T	R	Q	Q	P	Q	D	S	Y	V	L	A	D	V	L	A	T	L	R	A	A	G	V	P	A	L	T	D	D	N	Y	A	V	M	K	V	A	R	I	G	C	E	C	G	A	N	V	S	T	F
Query Conservation				.	.	.	.	.											.
Alig confidence				.	.	.	.	.											.
Template Conservation
Template Sequence	E	Y	E	P	G	K	A	V	K	P	E	D	L	D	D	A	L	R	K	N	P	D	V	E	A	V	T	I	T	Y	N	E	T	S	T	G	V	L	N	P	L	P	E	L	A	K	V	A	K	E	H	D	K	L	V	F	V	D	A	V	S	A	M	G	G	A	D	I	K	F	D	K	W	G	L	D	V	V	F	S
Template Known Secondary structure				T	T																T	T								S			T	T	T	T															T	T								T	T	T	B	T	T	B				T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

	193	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.																			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240							.	.	.	.	.	.	.
Predicted Secondary structure					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query SS confidence					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Query Sequence	S	C	F	K	.	L	F	G	P	E	G	V	G	A	V	V	G	D	A	D	V	I	N	R	I	R	A	T	L	Y	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	I	Q	G	A	Q	A	L	E	V	L	R	G	L	V	.	.	.	.	.	.	F	A	P	V	M	H	A
Query Conservation					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Alig confidence					.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation
Template Sequence	S	S	Q	K	A	F	G	V	P	P	G	L	A	I	G	A	F	S	E	R	F	L	E	I	A	E	K	M	P	E	R	G	W	Y	F	D	I	P	L	Y	V	K	Y	L	K	E	K	E	S	T	P	S	T	P	P	M	P	Q	V	F	G	I	N	V	A	L	R	I	I	E	K	M	G	G	K	E	K	W	L	E
Template Known Secondary structure		T	T	S	T	T				S	S															T	T		T	T			S	T	T													S	S		S	S																				T	T
Template Predicted Secondary structure
Template SS confidence
	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

	248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence	V	Q	A	G	V	S	E	R	L	L	A	L	L	N	G	G	A	V	P	E	V	K	S	A	V	I	A	N	A	Q	S	K	V	L	I	V	E	F	H	Q	P	I	.	A	A	R	V	L	E	E	A	Q	K	R	G	A	L	P	Y	P	V	G	A	E	S	K	Y	E	I	P	P	L	F	Y	R	L	S	G	T	F
Query Conservation																																											.
Alig confidence																								.	.																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	M	Y	E	K	R	A	K	M	V	R	E	G	V	R	E	I	G	L	D	I	L	A	E	.	.	P	G	H	E	S	P	T	I	T	A	V	L	T	P	P	G	I	K	G	D	E	V	Y	E	A	M	R	K	R	G	F	E	L	A	K	G	Y	G	S	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T	T			B	S	S		.	.	T	T		B		S	S								T	T													T	T								G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

	327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	Q	A	N	P	Q	S	E	H	C	A	I	R	I	N	P	N	R	S	G	E	E	T	V	L	R	I	L	R	E	S	I	A	S	I
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	E	K	T	F	R	I	G	H	M	G	Y	M	K	F	E	D	I	Q	E	M	L	D	N	L	R	E	V
Template Known Secondary structure	.	.	.	.	.	.	.	.	T	T								S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.
Template SS confidence
									349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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