 |
Job Description | P76291 | Confidence | 82.45% | Date | Thu Jan 5 12:21:36 GMT 2012 |
Rank | 419 | Aligned Residues | 102 |
% Identity | 18% | Template | c3n7uD_ |
PDB info |
PDB header:oxidoreductase | Chain: D: PDB Molecule:formate dehydrogenase; |
PDBTitle: nad-dependent formate dehydrogenase from higher-plant arabidopsis2 thaliana in complex with nad and azide
|
Resolution | 2.00 Å |
|
 |
  |   |
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | K | W | D | R | V | L | P | H | L | S | D | L | T | G | R | T | I | L | D | V | G | C | G | . |
S | G | Y | H | M | W | R | M | I | G | A | G | A | H | L | A | V | G | I | D | P | T | Q | L | F | L | C | Q | F | E | A | V | R | K | L | L | G | N | D | Q | R | A | H | L | L | P | L | G | I | E | Q | L | P | A | L |
Query Conservation |   |
  |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
| . |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |
|
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|
|   |
|
|
| . | . |
Template Sequence |   |
W | N | V | A | G | I | A | Y | R | A | Y | D | L | E | G | K | T | I | G | T | V | G | A | G | R | I | G | K | L | L | L | Q | R | L | K | P | F | G | C | N | L | L | Y | H | D | R | L | Q | M | A | P | E | L | E | K | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
T | G | A | K | F | V | E | D | L | N | E | M | L | . |
. |
Template Known Secondary structure |   |
|
| T |  |  |  |  | T | T |
|
|
| S | T | T |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | G | G | G |
|
|  |  |  |  |  |
| S | S |
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  | T |
|  |  |
| S | S |  |  |  |  | G | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|
|
|  |  |
|
|
|  |  |  |  |  | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 240 | . | . | . | . | . | |
|
  |
  |   |
188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | A | F | D | T | V | F | S | M | G | V | L | Y | H | R | R | S | P | L | E | H | L | . |
W | Q | L | K | D | Q | L | V | N | E | G | E | L | V |
Query Conservation |   |
  |   |
|
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
| . |   |   |   |   |   |   |
|
|
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|   |   |   |
|
|
| . | . |
|   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
|   |
|
|   |
|
|
Template Sequence |   |
P | K | C | D | V | I | V | I | N | M | P | L | . |
. |
T | E | K | T | R | G | M | F | N | K | E | L | I | G | K | L | K | K | G | V | L | I | V |
Template Known Secondary structure |   |
G | G |
| S |  |  |  |  |
| S |
|
| . | . |
| T | T | T | T | T |
| B |
|  |  |  |  |  | T | S |
| T | T |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |
|
|
| . | . |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
246 | . | . | . | 250 | . | . | . | . | . | . | . | |
|
. | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|