Job Description P76291 Confidence 98.07% Date Thu Jan 5 12:21:36 GMT 2012 Rank 294 Aligned Residues 118 % Identity 18% Template c3lkzB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Resolution 2.00 Å

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		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.														.	.	.	.	.	.
Query SS confidence																																						.														.	.	.	.	.	.
Query Sequence		R	S	D	W	K	W	D	R	V	L	P	H	L	S	D	L	T	G	R	T	I	L	D	V	G	C	G	S	G	Y	H	M	W	R	M	I	.	G	A	G	A	H	L	A	V	G	I	D	P	T	.	.	.	.	.	.	Q	L	F	L	C	Q	F	E	A	V	R	K	L	L	G	N	D	Q	R	A	H	L	L	P
Query Conservation																																						.														.	.	.	.	.	.
Alig confidence																																						.														.	.	.	.	.	.				.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.
Template Sequence		R	G	T	A	K	L	R	W	L	V	E	R	R	F	L	E	P	V	G	K	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	M	A	T	Q	K	R	V	Q	E	V	R	G	Y	T	K	G	G	P	G	H	E	E	P	Q	L	.	.	.	.	.	.	.	V	Q	S	Y	G	W	N	I	V	T	M	K	S	G
Template Known Secondary structure		T											T	T	S											T		T	T								T	T		T	T											S	T	T	S						.	.	.	.	.	.	.			B	T	T	G	G	G						S
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.								.	.	.	.	120	.	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.								.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																							.
Query SS confidence																					.	.	.	.	.	.	.																							.
Query Sequence		L	G	I	E	Q	L	P	A	L	K	A	F	D	T	V	F	S	M	G	.	.	.	.	.	.	.	V	L	Y	H	R	R	S	P	L	E	H	L	W	Q	L	K	D	Q	L	V	N	E	.	G	E	L	V	L	E	T	L	V	I	D	G	D
Query Conservation																					.	.	.	.	.	.	.																							.
Alig confidence									.												.	.	.	.	.	.	.							.																.
Template Conservation									.																									.
Template Sequence		V	D	V	F	Y	R	P	.	S	E	C	C	D	T	L	L	C	D	I	G	E	S	S	S	S	A	E	V	E	E	H	R	.	T	I	R	V	L	E	M	V	E	D	W	L	H	R	G	P	R	E	F	C	V	K	V	L	C	P	Y	M	P
Template Known Secondary structure				T	T	S	S		.					S											S									.													T	T										S		T	T	S
Template Predicted Secondary structure									.																									.
Template SS confidence
		130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions