Job Description P76291 Confidence 99.24% Date Thu Jan 5 12:21:36 GMT 2012 Rank 244 Aligned Residues 127 % Identity 15% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																										.																									.	.	.															.	.	.
Query SS confidence																										.																									.	.	.															.	.	.
Query Sequence		T	G	R	T	I	L	D	V	G	C	G	S	G	Y	H	M	W	R	M	I	G	A	G	A	.	H	L	A	V	G	I	D	P	T	Q	L	F	L	C	Q	F	E	A	V	R	K	L	L	G	.	.	.	N	D	Q	R	A	H	L	L	P	L	G	I	E	Q	.	.	.	L	P	A	L	K	A	F	D	T	V	F
Query Conservation																										.																									.	.	.															.	.	.
Alig confidence																										.																									.	.	.															.	.	.
Template Conservation
Template Sequence		K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	T	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F	V	R	Q	T	P	D	N	T	Y	D	V	V	I
Template Known Secondary structure												T	T	S							T	T		T	T									S																	G	G	G	G		T	T						S								T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.
Query Sequence		S	M	G	V	L	Y	H	R	R	S	P	.	.	.	.	.	.	L	E	H	L	W	Q	L	K	D	Q	L	V	N	E	G	E	L	V	L	E	T	L	V	I	D	G	D	E	N	T	V	L	V	P	G	D	R	Y	A	Q	M	R	N	V	Y	F	I	P	S	A	L	A	L	K	N	W	L	K	K	C	G	F	V
Query Conservation													.	.	.	.	.	.
Alig confidence						.	.	.	.	.			.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	T	T	.	.	.	.	.	D	P	A	S	K	L	F	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A
Template Known Secondary structure					S	.	.	.	.	.						S	S																									T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T		S
Template Predicted Secondary structure						.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		269	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	Q	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions