Job Description P76291 Confidence 97.15% Date Thu Jan 5 12:21:36 GMT 2012 Rank 311 Aligned Residues 121 % Identity 19% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.														.	.	.	.	.	.	150	.	.	.															.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Query Sequence		T	I	L	D	V	G	C	G	S	G	Y	H	M	W	R	M	I	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	H	L	A	V	G	I	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	L	F	L	C	Q	F	E	A	V	R	K	L	L	G	N	.	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R
Template Known Secondary structure						S			T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T				S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
						171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																				.	.	.	.	.	.																.	.	.
Query SS confidence		.	.	.	.																				.	.	.	.	.	.																.	.	.
Query Sequence		.	.	.	.	D	Q	R	A	H	L	L	P	L	G	I	E	Q	L	P	A	L	K	A	.	.	.	.	.	.	F	D	T	V	F	S	M	G	V	L	Y	H	R	R	S	.	.	.	P	L	E	H	L	W	Q	L	K	D	Q	L	V	N	E	G	E	L	V	L	E	T	L	V	I	D	G	D	E	N	T	V	L
Query Conservation		.	.	.	.																				.	.	.	.	.	.																.	.	.
Alig confidence		.	.	.	.																				.	.	.	.	.	.																.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G	G																						S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	G	D	R	Y	A	Q	M	R	N	V	Y	F	I	P	S	A	L	A	L	K	N	W	L	K	K	C	G	F	V	D	I	R	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	G	F	V	R	R	G	L	Q	E	A	G	F	T	M	Q	K	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions