Job Description P00393 Confidence 98.82% Date Thu Jan 5 10:56:36 GMT 2012 Rank 212 Aligned Residues 296 % Identity 18% Template d1kdga1 SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain FAD-linked reductases, N-terminal domain Resolution 1.50

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S
Query Conservation
Alig confidence																													.	.	.	.	.																																															.	.
Template Conservation																													.	.	.	.	.																																															.	.
Template Sequence		T	P	Y	D	Y	I	I	V	G	A	G	P	G	G	I	I	A	A	D	R	L	S	E	A	G	K	K	.	.	.	.	.	V	L	L	L	E	R	G	G	P	S	T	K	Q	T	G	G	T	Y	V	A	P	W	A	T	S	S	G	L	T	K	F	D	I	P	G	L	F	E	S	L	F	T	D	S	N	P	.	.
Template Known Secondary structure												S													T	T			.	.	.	.	.						S	S				S	G	G	G	T						G	G	G	G	G	G	T			T	T	T		G	G	G	G	G	G	G	G	T		S			.	.
Template Predicted Secondary structure																													.	.	.	.	.																																															.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.						.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.										.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.
Query Sequence		V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	.	.	.	.	.	.	.	.	.	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M
Query Conservation																																											.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	W	W	C	K	D	I	T	V	F	A	G	C	L	V	G	G	G	T	S	V	N	G	A	L	Y	W	Y	P	N	D	G	D	F	S	S	S	V	G	W	P	S	S	W	T	N	H	A	P	Y	T	S	K	L	S	S	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	B		T	T		S	S			B		S	T	T	G	G	G	G	T	S			B						G	G	G	G		G	G	G	T			G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																									288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		L	N	L	F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	.	.	P	P	R	I	S	A	A	A
Query Conservation																																																																								.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	S	T	D	H	P	S	T	D	G	Q	R	Y	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	F	N	V	V	S	Q	L	L	K	G	Q	G	Y	N	Q	A	T	I	N	D	N	P	N	Y	K	D	H	V	F	G	Y	S	A	F	D	F	L	N	G	K	R	A	G	P	V	A	T	Y	L
Template Known Secondary structure		S			B	S			S	T	T	S				S		.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	T						G	G	G	S	T	T			T	T							B				T	T								T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360														.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.									.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.										.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.										.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	N	E	L	T	K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	.	.	.	.	.	G	L	H	T	K	D	G	E	Y	.	.	.	.	.	.	.	.	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.										.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.										.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	A	L	A	R	P	N	F	T	F	K	T	N	V	M	V	S	N	V	V	R	N	G	S	Q	I	L	G	V	Q	T	N	D	P	T	L	G	P	N	G	F	I	P	V	T	P	K	G	R	V	I	L	S	A	G	A	F	G	T	S	R	I	L	F	Q	S	G	I	G	P	T	D	M	I	Q	T	V	Q	S
Template Known Secondary structure						T		T	T						S										T	T								S		T	T	S	S	G	G	G														S												T	T	B	S										T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
																								287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																.														.								.	.
Template Conservation																																		.																.														.								.	.
Template Sequence		N	P	T	A	A	A	A	L	P	P	Q	N	Q	W	I	N	L	P	V	G	M	T	T	I	G	S	S	P	Q	S	A	V	.	V	D	S	N	V	K	V	F	G	T	N	N	L	F	I	.	V	D	A	G	I	I	P	H	L	P	T	G	N	.	P	Q	G	T	L	M	S	.	.	A	A	E	Q	A	A	A	K
Template Known Secondary structure		S							S			G	G	G		B				T	T				B		S		T	T	T		S	.	B		T	T		B	B	T	T		S	S				.		S	G	G	G		S	S			S	S		.	S							.	.
Template Predicted Secondary structure																																		.																.														.								.	.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.		.	.	.	.	.	.	530	.	.	.	.	.	.	.	.		.	540	.	.	.	.	.	.	.	.	.	550	.		.	.	.	.	.	.	.			.	560	.	.	.	.	.	.
		345	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		748	.	750

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions