Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 2 Aligned Residues 399 % Identity 16% Template c3kpgA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone Resolution 2.30 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	V
Query Conservation
Alig confidence																										.	.
Template Conservation																										.	.
Template Sequence		M	A	H	V	V	I	L	G	A	G	T	G	G	M	P	A	A	Y	E	M	K	E	A	L	.	.	G	S	G	H	E	V	T	L	I	S	A	N	D	Y	F	Q	F	V	P	S	N	P	W	V	G	V	G	W	K	E	R	D	D	I	A	F	P	I	R	H	Y	V	E	R	K	G	I	H	F	I	A	Q	S	A
Template Known Secondary structure											S	T	T													.	.		T	T	S							S	S	S					G	G	G							T	S	S															T	T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.																																																									.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.																																																									.	.
Template Sequence		E	Q	I	D	A	E	A	Q	N	I	T	.	.	.	.	.	.	.	.	.	.	.	L	A	D	G	N	T	V	H	Y	D	Y	L	M	I	A	T	G	P	K	L	A	F	E	N	V	P	G	S	D	P	H	E	G	P	V	Q	S	I	C	T	V	D	H	A	E	R	A	F	A	E	Y	Q	A	L	L	R	.	.
Template Known Secondary structure						T	T	T	T				.	.	.	.	.	.	.	.	.	.	.		T	T	S						S												G	G	G	S	T	T		S	T	T	T	S	S					S	S																	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.																																																									.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.												90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	.	.	.	.	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G
Query Conservation																																																								.	.	.	.
Alig confidence		.	.	.	.	.	.																																																	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	E	P	G	P	I	V	I	G	A	M	A	G	A	S	C	F	G	P	A	Y	E	Y	A	M	I	V	A	S	D	L	K	K	R	G	M	R	D	K	I	P	S	F	T	F	I	T	S	E	P	Y	I	G	H	L	G	I	Q	G	V	G	D	S	K	G	I	L	T	K	G	L	K	E	E	G
Template Known Secondary structure		.	.	.	.	.	.	S										T	T																						T		G	G	G		S							S	S	S	S	T	T		T	T	T	T			T	T												T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260										.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	T	K	.	.	.	.	.	.	.	.	.	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																											.
Template Conservation																																																									.
Template Sequence		I	E	A	Y	T	N	C	K	V	T	K	V	E	D	N	K	M	Y	V	T	Q	V	D	E	K	G	E	T	I	K	E	M	V	L	P	V	K	F	G	M	M	I	P	A	F	K	G	V	P	A	V	A	G	V	E	.	G	L	C	N	P	G	G	F	V	L	V	D	E	H	Q	R	S	K	K	Y	A	N	I	F
Template Known Secondary structure							S								T	T									T	T	S											S																T	S	T	.	T	T	B		T	T	S		B		B		T	T	S	B	B	S	S		T	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.																													.
Query SS confidence																	.	.	.	.																													.
Query Sequence		A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	.	.	.	.	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	.	K	N	Y	Q	Y	K	D	H	G	S	L	V	S	L	S	N	F	S	T	V	G	S	L	M	G	N	L	T	R	G	S	M
Query Conservation																	.	.	.	.																													.
Alig confidence																	.	.	.	.																													.
Template Conservation
Template Sequence		A	A	G	I	A	I	A	I	P	P	V	E	T	T	P	V	P	T	G	A	P	K	T	G	Y	M	I	E	S	M	V	S	A	A	V	H	N	I	K	A	D	L	E	G	R	K	G	E	Q	T	M	G	T	W	N	A	V	C	F	A	D	M	G	D	R	G	A	A	F	I	A	L	P	Q	L	K	P	R	K	V
Template Known Secondary structure				G	G	G	B					S				S	S																										T	T	T									S										S	S									S	S	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	E	G	R	I	A	R	F	V	Y	I	S	L	Y	R	M	H	Q	I	A	L	H	G	Y	F	K	T	G	L	M	M	L	V	G	S	I	N	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	F	A	Y	G	R	W	V	H	L	A	K	V	A	F	E	K	Y	F	I	R	K	M	K	M	G	V	S	E	P	F	Y	E	K	V	L	F	K
Template Known Secondary structure																															S		S		G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.