Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 29 Aligned Residues 305 % Identity 22% Template c3kljA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum Resolution 2.10 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	.	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S
Query Conservation																																													.
Alig confidence																										.	.	.	.	.															.
Template Conservation																										.	.	.	.	.
Template Sequence		S	T	K	I	L	I	L	G	A	G	P	A	G	F	S	A	A	K	A	A	L	G	K	C	.	.	.	.	.	D	D	I	T	M	I	N	S	E	K	Y	L	P	Y	Y	R	P	R	L	N	E	I	I	A	K	N	K	S	I	D	D	I	L	I	K	K	N	D	W	Y	E	K	N	N	I	K	V	I	T	S	E
Template Known Secondary structure		B		S							S											T	T	T		.	.	.	.	.	S							S	S	S	S			B		G	G	G							S				G	G	G	T	B	S	S								T	T						S
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.																														.																							.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.																														.																							.	.	.	.	.	.
Template Sequence		F	A	T	S	I	D	P	N	N	K	L	V	.	.	.	.	.	.	.	.	.	.	T	L	K	S	G	E	K	I	K	Y	E	K	L	I	I	A	S	G	S	I	A	N	K	I	K	V	P	H	A	.	D	E	I	F	S	L	Y	S	Y	D	D	A	L	K	I	K	D	E	C	K	N	K	.	.	.	.	.	.
Template Known Secondary structure								T	T	T	T			.	.	.	.	.	.	.	.	.	.			T	T	S						S																T	T		.	S						S	S															.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.																														.																							.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.											90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	.	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R
Query Conservation																																																															.
Alig confidence		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	G	K	A	F	I	I	G	G	G	I	L	G	I	E	L	A	Q	A	I	I	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	P	A	S	I	G	I	I	L	E	Y	P	L	E	R	Q	L	D	R	D	G	G	L	F	L	K	D	K	L	D	R	L	G	I	K
Template Known Secondary structure		.	.	.	.	.	.	.	S								S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S	S	S	S		T	T	T	S														T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.																.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																										.	.																	.
Template Conservation												.	.	.	.	.	.	.	.	.																										.	.																	.
Template Sequence		I	Y	T	N	S	N	F	E	E	M	.	.	.	.	.	.	.	.	.	G	D	L	I	R	S	S	C	V	I	T	A	V	G	V	K	P	N	L	D	F	I	K	D	T	.	.	E	I	A	S	K	R	G	I	L	V	N	D	H	M	E	T	.	S	I	K	D	I	Y	A	C	G	D	V	A	E	F	Y	G	K
Template Known Secondary structure					S			G	G	G		.	.	.	.	.	.	.	.	.							S													G	G	G	T	T	S	.	.				B	S	S	S					T	T		B		.	S	S	T	T					G	G	G				T	T	B
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																										.	.																	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.										.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	K	N	Y	Q	Y	K	D	H	G	S	L	V	S	L	S	N	F	S	T
Query Conservation
Alig confidence		.	.	.	.																					.	.	.	.
Template Conservation		.	.	.	.																					.	.	.	.
Template Sequence		.	.	.	.	N	P	G	L	I	N	I	A	N	K	Q	G	E	V	A	G	L	N	A	C	.	.	.	.	G	E	D	A	S	Y	S	E	I	I	P	S	P	I	L	K	V	S	G	I	S	I	I
Template Known Secondary structure		.	.	.	.																				T	.	.	.	.	T																	T	T
Template Predicted Secondary structure		.	.	.	.																					.	.	.	.
Template SS confidence
						267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions