Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 9 Aligned Residues 297 % Identity 28% Template c3iwaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of a fad-dependent pyridine nucleotide-disulphide2 oxidoreductase from desulfovibrio vulgaris Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	V	I
Query Conservation
Alig confidence																								.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	V	V	V	I	G	A	V	A	L	G	P	K	A	A	C	R	F	K	R	L	.	.	.	D	P	E	A	H	V	T	M	I	D	Q	A	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	E	T	R	A	H
Template Known Secondary structure										S	S													.	.	.		T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																								.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																																		40	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	.	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N
Query Conservation																																																				.
Alig confidence																	.	.	.	.	.	.																														.																							.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.																																																					.	.	.	.	.	.	.
Template Sequence		A	I	D	R	A	A	H	T	V	E	I	E	N	L	R	.	.	.	.	.	.	T	G	E	R	R	T	L	K	Y	D	K	L	V	L	A	L	G	S	K	A	N	R	P	P	V	E	G	M	D	L	A	G	V	T	P	V	T	N	L	D	E	A	E	F	V	Q	H	A	I	S	A	G	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	T	T							T	T	.	.	.	.	.	.	T									S														S		T	T	T	T	S	B	T						S													T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.																																																					.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R	V	L
Query Conservation
Alig confidence		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	E	V	S	K	A	V	I	V	G	G	G	F	I	G	L	E	M	A	V	S	L	A	D	M	W	G	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	T	T	V	V	E	L	A	D	Q	I	M	P	G	F	T	S	K	S	L	S	Q	M	L	R	H	D	L	E	K	N	D	V	V	V	H
Template Known Secondary structure		.	.	.	.	S		S								S																.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S	S	S	S	T	T	T	S															T	T
Template Predicted Secondary structure		.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.														.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		T	Q	T	M	V	T	S	A	D	E	G	.	.	.	.	G	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																																																		.
Template Conservation																																																																		.
Template Sequence		T	G	E	K	V	V	R	L	E	G	E	N	G	K	V	A	R	V	I	T	D	K	R	T	L	D	A	D	L	V	I	L	A	A	G	V	S	P	N	T	Q	L	A	R	D	A	G	L	E	L	D	P	R	G	A	I	I	V	D	T	R	M	R	T	.	S	D	P	D	I	F	A	G	G	D	C	V	T	I	P
Template Known Secondary structure			S									S	S	S	B							S	S						S						S													T			B		T	T							T	T		B		.	S	S	T	T					G	G	G
Template Predicted Secondary structure																																																																		.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		321	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		R	P	E	G	G	.	.	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	K	N	Y	Q	Y	K	D	H	G	S	L	V	S	L	S	N	F	S	T
Query Conservation							.	.
Alig confidence							.	.																						.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		N	L	V	T	G	K	P	G	F	F	P	L	G	S	M	A	N	R	Q	G	R	V	I	G	T	N	L	A	.	.	.	.	D	G	D	A	T	F	P	G	A	V	G	S	W	A	V	K	L	F	E	G	S	A	S
Template Known Secondary structure		B	T	T	T	S	S							T	T														T	.	.	.	.	T								B									S	S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions