Phyre 2 alignment of P00393 with c2zbwA

Job Description P00393
Confidence 99.97% Date Thu Jan 5 10:56:36 GMT 2012

Rank 63 Aligned Residues 319

% Identity 18% Template c2zbwA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	P	L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G
Query Conservation
Alig confidence																											.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence	A	D	H	T	D	V	L	I	V	G	A	G	P	T	G	L	F	A	G	F	Y	V	G	X	R	G	.	.	.	.	.	L	S	F	R	F	V	D	P	L	P	E	P	G	G	Q	L	T	A	L	Y	P	E	K	Y	I	Y	D	V	A	G	F	P	K	V	Y	A	K	D	L	V	K	G	L	V	E	Q	V	A	P
Template Known Secondary structure												S													T	T	.	.	.	.	.								S	S	S	S	S							T		T	T	S					S	T	T		S	S															G	G
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	N	P	V	Y	S	L	G	E	R	A	E	T	L	E	R	E	G	D	L	F	K	V	T	T	S	Q	G	N	A	Y	T	A	K	A	V	I	I	A	A	G	V	G	A	F	E	P	R	R	I	G	A	P	G	E	R	E	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	G	V	Y	Y	A	V
Template Known Secondary structure	G							S										T	T							T	T	S													T	T	S										T	T	T	T	T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T			S	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.														.	.	.	140	.	.	.	.

	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence	K	S	K	A	E	F	Q	G	K	R	V	L	I	V	G	G	G	D	S	A	V	D	W	A	L	N	L	L	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	R	I	T	L	I	H	R	R	P	Q	F	R	A	H	.	.	E	A	S	V	K	E	L	X	K	A	H	E	E	G	R	L	E
Template Known Secondary structure	S		G	G	G	G	T	T								S	S										T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S							S	S	S	S			S		.	.													T	T	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.										.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	.	.	.	.	.	.	.	.	.	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																																.															.
Template Conservation																																																									.															.
Template Sequence	V	L	T	P	Y	E	L	R	R	V	E	G	D	E	R	V	R	W	A	V	V	F	H	N	Q	T	Q	E	E	L	A	L	E	V	D	A	V	L	I	L	A	G	Y	I	T	K	L	G	P	L	A	N	W	G	L	A	.	L	E	K	N	K	I	K	V	D	T	T	X	A	T	.	S	I	P	G	V	Y	A	C
Template Known Secondary structure			T	T									S	S	S									T	T	T									S													G	G	G	G	G	S				.			T	T						T	T		B		.	S	S	T	T
Template Predicted Secondary structure																																																									.															.
Template SS confidence
	208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.

	314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	.	K	P	L	K	N	Y	Q	Y	K	D	H	G
Query Conservation																																							.
Alig confidence												.	.	.	.	.																							.
Template Conservation												.	.	.	.	.
Template Sequence	G	D	I	V	T	Y	P	G	K	L	P	.	.	.	.	.	L	I	V	L	G	F	G	E	A	A	I	A	A	N	H	A	A	A	Y	A	N	P	A	L	K	V	N	P	G	H	S	S	E	K	A
Template Known Secondary structure	S	T	T				T	T				.	.	.	.	.																						T	T	S		S	S				G	G	G	S
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
	286	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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