Job Description P00393 Confidence 99.92% Date Thu Jan 5 10:56:36 GMT 2012 Rank 81 Aligned Residues 292 % Identity 17% Template c2q7vA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of deinococcus radiodurans thioredoxin2 reductase Resolution 1.90 Å

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		4	.	.	.						.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure						.	.	.	.	.																																																.	.	.	.	.
Query SS confidence						.	.	.	.	.																																																.	.	.	.	.
Query Sequence		P	L	K	K	.	.	.	.	.	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	.	.	.	.	.	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R
Query Conservation						.	.	.	.	.																																																.	.	.	.	.
Alig confidence						.	.	.	.	.																						.	.	.	.	.																						.	.	.	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		T	A	P	T	A	H	D	Y	D	V	V	I	I	G	G	G	P	A	G	L	T	A	A	I	Y	T	G	R	A	Q	.	.	.	.	.	L	S	T	L	I	L	E	K	G	M	P	G	G	Q	I	A	W	S	E	E	V	E	N	F	P	G	F	P	E	P	I	A	G	M	E	L	A	Q	R	M	H	Q	Q	A	E
Template Known Secondary structure																	S													T	T	.	.	.	.	.								S	S		T	T	G	G	G	G	G		S		B			S	T	T		S	S		B
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.						.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	G	F	Q	F	Q	L	G	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E
Query Conservation
Alig confidence																		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	G	A	K	V	E	M	D	E	V	Q	G	V	Q	H	.	.	.	.	.	.	D	A	T	S	H	P	Y	P	F	T	V	R	G	Y	N	G	E	Y	R	A	K	A	V	I	L	A	T	G	A	D	P	R	K	L	G	I	P	G	E	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	W
Template Known Secondary structure			T	T														.	.	.	.	.	.		T	T	S	S	S								S	S																						T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	B
Template Predicted Secondary structure																		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.																.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	N	L	F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Sequence		G	K	G	V	S	T	C	A	T	C	D	G	F	F	Y	K	G	K	K	V	V	V	I	G	G	G	D	A	A	V	E	E	G	M	F	L	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	D	E	V	T	V	I	H	R	R	D	T	L	R	A	N	K	.	.	.	.	.	V	A	Q	A
Template Known Secondary structure		T	T	T			S						G	G	G	G	T	T									S											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S							S	S	S	S			S			.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.										.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.
Query Sequence		N	E	L	T	K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	.	.	.	.	.	.	.	.	.	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T
Query Conservation																											.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.																													.
Template Conservation																																																																.
Template Sequence		R	A	F	A	N	P	K	M	K	F	I	W	D	T	A	V	E	E	I	Q	G	A	D	S	V	S	G	V	K	L	R	N	L	K	T	G	E	V	S	E	L	A	T	D	G	V	F	I	F	I	G	H	V	P	N	T	A	F	V	K	D	T	.	V	S	L	R	D	D	G	Y	V	D	V	R	D	E	I	Y	T
Template Known Secondary structure					T		T	T						S									S	S	S									T	T	T									S						S					S		G	G	G	T	T	T	.	S		B		T	T	S		B			B	T	T	T	B
Template Predicted Secondary structure																																																																.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N
Query Conservation
Alig confidence		.																		.	.	.	.	.	.	.
Template Conservation		.																		.	.	.	.	.	.	.
Template Sequence		.	N	I	P	M	L	F	A	A	G	D	V	S	D	Y	I	Y	R	.	.	.	.	.	.	.	Q	L	A	T	S	V	G	A	G	T	R	A	A	M	M	T	E	R	Q	L	A
Template Known Secondary structure		.	S	S	T	T					S	T	T	T		S	S			.	.	.	.	.	.	.
Template Predicted Secondary structure		.																		.	.	.	.	.	.	.
Template SS confidence
			275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.								.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions