Job Description P00393 Confidence 99.94% Date Thu Jan 5 10:56:36 GMT 2012 Rank 77 Aligned Residues 290 % Identity 16% Template c2q0lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+ Resolution 1.45 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.							.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	.	.	.	.	.	.	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q
Query Conservation																																																				.	.	.	.	.	.
Alig confidence																										.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																										.	.	.	.	.
Template Sequence		M	I	D	C	A	I	I	G	G	G	P	A	G	L	S	A	G	L	Y	A	T	R	G	G	.	.	.	.	.	V	K	N	A	V	L	F	E	K	G	M	P	G	G	Q	I	T	G	S	S	E	I	E	N	Y	P	G	V	K	E	V	V	S	G	L	D	F	M	Q	P	W	Q	E	Q	C	F	R	F	G	L	K
Template Known Secondary structure											S													T	T	.	.	.	.	.		S	S						S	S	S	T	T		G	G	G	G		S		B			S	T	T			S		B															T	T	S
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	L	G	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	E	M	T	A	V	Q	R	V	S	K	K	D	S	H	F	V	I	L	.	.	.	.	.	.	.	.	.	A	E	D	G	K	T	F	E	A	K	S	V	I	I	A	T	G	G	S	P	K	R	T	G	I	K	G	E	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	W	G	K	G	V	S
Template Known Secondary structure					S									T	T						.	.	.	.	.	.	.	.	.		T	T	S																						B	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.										.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																.	.	.	.	.	130	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		T	C	A	T	C	D	G	F	F	Y	K	N	K	E	V	A	V	L	G	G	G	D	T	A	V	E	E	A	I	Y	L	A	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	K	K	V	Y	L	I	H	R	R	D	G	F	R	C	A	P	.	.	.	.	.	I	T	L	E	H	A	K	N	N
Template Known Secondary structure		S						G	G	G	G	T	T	S								S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S							S	S	S	S			S			.	.	.	.	.								T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.											260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query Sequence		L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	T	.	.	.	.	.	.	.	.	.	.	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	.	.	.	.	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T
Query Conservation																							.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation
Template Sequence		D	K	I	E	F	L	T	P	Y	V	V	E	E	I	K	G	D	A	S	G	V	S	S	L	S	I	K	N	T	A	T	N	E	K	R	E	L	V	V	P	G	F	F	I	F	V	G	Y	D	V	N	N	A	V	L	K	Q	E	D	N	S	M	L	C	K	C	D	E	Y	G	S	I	V	V	D	F	S	M	K	T
Template Known Secondary structure		T	T					T	T										T	T										T	T	T									S						S							G	G	G	B		T	T	S		B	S	S		B		T	T	S		B				T	T		B
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G
Query Conservation
Alig confidence		.																.	.	.	.	.	.	.
Template Conservation		.																.	.	.	.	.	.	.
Template Sequence		.	N	V	Q	G	L	F	A	A	G	D	I	R	I	F	A	.	.	.	.	.	.	.	P	K	Q	V	V	C	A	A	S	D	G	A	T	A	A	L	S	V	I	S	Y	L	E	H
Template Known Secondary structure		.	S	S	T	T					S	T	T	B	T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure		.																.	.	.	.	.	.	.
Template SS confidence
			272	.	.	.	.	.	.	.	280	.	.	.	.	.	.								.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions