Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 19 Aligned Residues 327 % Identity 20% Template c2cduB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nadph oxidase; PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis Resolution 1.8 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80
Predicted Secondary structure																																																										.	.	.																				.
Query SS confidence																																																										.	.	.																				.
Query Sequence		L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	.	.	.	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	.	Q
Query Conservation																																																										.	.	.																				.
Alig confidence				.																					.	.	.																															.	.	.																				.
Template Conservation				.																					.	.	.
Template Sequence		M	K	.	V	I	V	V	G	C	T	H	A	G	T	F	A	V	K	Q	T	I	A	D	.	.	.	H	P	D	A	D	V	T	A	Y	E	M	N	D	N	I	S	F	L	S	G	I	A	L	Y	L	G	K	E	I	K	N	N	D	P	R	G	L	F	Y	S	S	P	E	E	L	S	N	L	G	A	N	V	Q	M
Template Known Secondary structure				.							S														.	.	.		T	T								S	S	S			S	B									T	T		S	G	G	G		G	G	G	G	B	S									T	T
Template Predicted Secondary structure				.																					.	.	.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K
Query Conservation
Alig confidence																													.	.	.	.	.	.																																													.	.	.
Template Conservation																													.	.	.	.	.	.																																													.	.	.
Template Sequence		R	H	Q	V	T	N	V	D	P	E	T	K	T	I	K	V	K	D	L	I	T	N	E	E	K	T	E	.	.	.	.	.	.	A	Y	D	K	L	I	M	T	T	G	S	K	P	T	V	P	P	I	P	G	I	D	S	S	R	V	Y	L	C	K	N	Y	N	D	A	K	K	L	F	E	E	A	P	K	.	.	.
Template Known Secondary structure		S								G	G	G	T							T	T	T							.	.	.	.	.	.			S														S		T	T	T	T	S	T	T					S	S											G	G	G	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.																																													.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	K	T	I	T	I	I	G	S	G	Y	I	G	A	E	L	A	E	A	Y	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	Y	N	V	N	L	I	D	G	H	E	R	V	L	Y	K	Y	F	D	K	E	F	T	D	I	L	A	K	D	Y	E	A	H	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		S								S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S	S	S	S	T	T	T	T	T	S															T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170															.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	.	.	.	.	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																																	.																.
Template Conservation																																																						.																.
Template Sequence		V	N	L	V	L	G	S	K	V	A	A	F	E	E	V	D	D	E	I	I	T	K	T	L	D	G	K	E	I	K	S	D	I	A	I	L	C	I	G	F	R	P	N	T	E	L	L	K	G	K	V	A	.	M	L	D	N	G	A	I	I	T	D	E	Y	M	H	S	.	S	N	R	D	I	F	A	A	G	D	S
Template Known Secondary structure							S	S									T	T							T	T	S						S						S							G	G	G	T	T	T	S		.	B		T	T			B				T	T	S	B		.	S	S	T	T					G	G	G
Template Predicted Secondary structure																																																						.																.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.
		317	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		A	S	C	P	R	P	E	G	G	.	.	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	K	N	Y	Q	Y	K	D	H	G	S	L	V	S	L	S	N	F	S	T
Query Conservation											.	.
Alig confidence											.	.																						.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		A	A	V	H	Y	N	P	T	N	S	N	A	Y	I	P	L	A	T	N	A	V	R	Q	G	R	L	V	G	L	N	L	T	.	.	.	.	E	D	K	V	K	D	M	G	T	Q	S	S	S	G	L	K	L	Y	G	R	T	Y	V
Template Known Secondary structure		B					G	G	G	T																					T	S	S	.	.	.	.	S								B									T	T
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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