Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 17 Aligned Residues 332 % Identity 25% Template c1xhcA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase /nitrite reductase; PDBTitle: nadh oxidase /nitrite reductase from pyrococcus furiosus pfu-1140779-2 001 Resolution 2.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	.	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	V	I
Query Conservation																																												.
Alig confidence																								.	.	.	.	.	.															.
Template Conservation																								.	.	.	.	.	.
Template Sequence		K	V	V	I	V	G	N	G	P	G	G	F	E	L	A	K	Q	L	S	Q	T	Y	.	.	.	.	.	.	E	V	T	V	I	D	K	E	P	V	P	Y	Y	S	K	P	M	L	S	H	Y	I	A	G	F	I	P	R	N	R	L	F	P	Y	S	L	D	W	Y	R	K	R	G	I	E	I	R	L	A	E	E	A
Template Known Secondary structure									S											T	T	T	S	.	.	.	.	.	.							S	S	S	S					S	T	T						T	T	S	S		G	G	G	G		S	S									T						S
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N	L
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																												.																								.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.																												.																								.	.	.	.	.	.	.	.
Template Sequence		K	L	I	D	R	G	R	K	V	V	.	.	.	.	.	.	.	.	.	.	.	I	T	E	K	G	E	V	P	Y	D	T	L	V	L	A	T	G	A	R	A	R	E	P	Q	I	K	G	.	K	E	Y	L	L	T	L	R	T	I	F	D	A	D	R	I	K	E	S	I	E	N	S	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	T	T			.	.	.	.	.	.	.	.	.	.	.			S	S						S															S	B	T	.	G	G	G						S															.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																												.																								.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.												.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R	V	L	T
Query Conservation
Alig confidence		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		.	.	.	.	.	G	E	A	I	I	I	G	G	G	F	I	G	L	E	L	A	G	N	L	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	Y	H	V	K	L	I	H	R	G	A	M	F	L	G	L	.	D	E	E	L	S	N	M	I	K	D	M	L	E	E	T	G	V	K	F	F	L
Template Known Secondary structure		.	.	.	.	.	S								S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S	S	S			T	T		.															T	T
Template Predicted Secondary structure		.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
							136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.																.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	M	V	T	S	A	D	E	G	G	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G
Query Conservation
Alig confidence														.																													.	.																	.																		.	.	.
Template Conservation														.																													.	.																	.																		.	.	.
Template Sequence		N	S	E	L	L	E	A	N	E	E	G	V	.	L	T	N	S	G	F	I	E	G	K	V	K	I	C	A	I	G	I	V	P	N	V	D	L	A	R	R	S	.	.	G	I	H	T	G	R	G	I	L	I	D	D	N	F	R	T	.	S	A	K	D	V	Y	A	I	G	D	C	A	E	Y	S	G	I	.	.	.
Template Known Secondary structure		S								S	S			.			T	T						S																		T	.	.	T			B	S	S	S					T	T	S	B		.	S	S	T	T					G	G	G			B	T	T	B	.	.	.
Template Predicted Secondary structure														.																													.	.																	.																		.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.									.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.				.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	K	N	Y	Q	Y	K	D	H	G	S	L	V	.	.	.	.	.	.	.	.	S	L	S	N	F	S	T	V	G	S	L	M	G	N	L	T	R	.	.	.	G	S	M	M	I	E	G	R	I	A	R
Query Conservation																																											.	.	.	.	.	.	.	.																		.	.	.
Alig confidence		.																					.	.	.	.	.																.	.	.	.	.	.	.	.																		.	.	.
Template Conservation		.																					.	.	.	.	.
Template Sequence		.	I	A	G	T	A	K	A	A	M	E	Q	A	R	V	L	A	D	I	L	K	.	.	.	.	.	G	E	P	R	R	Y	N	F	K	F	R	S	T	V	F	K	F	G	K	L	Q	I	A	I	I	G	N	T	K	G	E	G	K	W	I	E	D	N	T	K	V	F	Y	I	G	A	V	V	F	N	D	I	R	K
Template Known Secondary structure		.				S																T	.	.	.	.	.	T							S	S									T	T										S	S							T	T												S
Template Predicted Secondary structure		.																					.	.	.	.	.
Template SS confidence
			268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		395	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	K	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions