Job Description P00393 Confidence 99.92% Date Thu Jan 5 10:56:36 GMT 2012 Rank 83 Aligned Residues 294 % Identity 17% Template c1vqwB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein with similarity to flavin-containing PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	T	P	L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																							.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.																							.	.	.
Template Sequence		L	P	T	I	.	R	K	I	A	I	I	G	A	G	P	S	G	L	V	T	A	K	A	L	L	A	E	.	.	.	K	A	F	D	Q	V	T	L	F	E	R	R	G	S	P	G	G	V	W	N	Y	T	S	T	L	S	N	K	L	P	V	P	S	T	N	P	I	L	T	T	E	P	I	V	G	P	A	A	L	P
Template Known Secondary structure				S		.									S												T	T	.	.	.	S			S							S	S	S	S	S	S	G	G	G	S			S				S				S	S	B			T	T						B			S	S	S
Template Predicted Secondary structure						.																							.	.	.
Template SS confidence
		3	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
																																			59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	.	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																					.
Template Conservation																																																																																	.
Template Sequence		V	Y	P	S	P	L	Y	R	D	L	Q	T	N	T	P	I	E	L	X	G	Y	C	D	Q	S	F	K	P	Q	T	L	Q	F	P	H	R	H	T	I	Q	E	Y	Q	R	I	Y	A	Q	P	L	L	P	F	I	K	L	A	T	D	V	L	D	I	E	K	K	D	G	S	W	V	V	T	Y	K	G	T	K	A	.
Template Known Secondary structure		B							T	T		B		S	S		T	T	T	S	S		T	T	S				T	T			S	S		B													G	G	G	G	G	G				S										T	T									S	S	T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	.	.	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G
Query Conservation																					.	.
Alig confidence		.	.																		.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	G	S	P	I	S	K	D	I	F	D	A	V	S	I	C	N	G	H	Y	E	V	P	Y	I	P	N	I	K	G	L	D	E	.	.	.	.	.	.	.	.	.	.	.	Y	A	K	A	V	P	G	S	V	L	H	S	S	L	F	R	E	P	E	L	F	V	G	E	S	V	L	V	V	G	G	A	S	S	A
Template Known Secondary structure		.	.	T									S								S	S	S	S	B		B				B	T				.	.	.	.	.	.	.	.	.	.	.					S	T	T	S				G	G	G				G	G	G	G	T	T									S
Template Predicted Secondary structure		.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.												190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	T	K	D	G
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	D	L	V	R	H	L	T	P	V	A	K	H	P	I	Y	Q	S	L	L	G	G	G	D	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	S	L	Q	Q	V	P	E	I	T	K	F	D	P	T	T	R	E	I	Y	L	K	G	G
Template Known Secondary structure									T	T	T	S		S	S						T	T			S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S												T	T	T	T					T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250																														.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		263	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		E	Y	I	E	.	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A
Query Conservation						.
Alig confidence						.																					.																																											.
Template Conservation																											.																																											.
Template Sequence		K	V	L	S	N	I	D	R	V	I	Y	C	T	G	Y	L	Y	S	V	P	F	P	S	L	A	.	K	L	K	S	P	E	T	K	L	I	D	D	G	S	H	V	H	N	V	Y	Q	H	I	F	Y	I	P	D	P	T	L	A	F	V	G	L	A	L	H	V	V	P	.	F	P	T	S	Q	A	Q	A	A	F	L
Template Known Secondary structure								S								B											.	S			S	T	T	T				S	S	S	S				S			T	T	T			T	T		T	T					S			B	S	S			.
Template Predicted Secondary structure																											.																																											.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.
		342	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		354	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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