Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 43 Aligned Residues 319 % Identity 20% Template c1v59B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ Resolution 2.20 Å

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		4	.	.	.				.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure						.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	L	K	K	.	.	.	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.																						.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		T	I	N	K	S	H	D	V	V	I	I	G	G	G	P	A	G	Y	V	A	A	I	K	A	A	Q	L	G	.	.	.	.	.	F	N	T	A	C	V	E	K	R	G	K	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	N	N	S	H	L	F	H	Q	M	H	T	E	A	Q	K	R	G	I	D
Template Known Secondary structure															S													T	T	.	.	.	.	.								S	S	S	S	S	S							S																				S	S	G	G	G	T
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
																								64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.
Template Conservation																																																																.	.	.
Template Sequence		V	N	G	D	I	K	I	N	V	A	N	F	Q	K	A	K	D	D	A	V	K	Q	L	T	G	G	I	E	L	L	F	K	K	N	K	V	T	Y	Y	K	G	N	G	S	F	E	D	E	T	K	I	R	V	T	P	V	D	G	L	E	G	T	.	.	.	V	K	E	D	H	I	L	D	V	K	N	I	I	V	A
Template Known Secondary structure			S	S																															T	T						S					S	S	S	S								S	S		T	T		.	.	.		S	S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	S	E	V	T	P	F	P	G	I	E	I	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	I	V	S	S	T	G	A	L	S	L	K	E	I	P	K	R	L	T	I	I	G	G	G	I	I	G	L	E	M	G	S	V	Y	S	R	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T				B	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								T	T		S	S			S								S													.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.																			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.												.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	.	.	.	.	.	.	.	.	.	.	.	L	H	T	K	D	G	E	Y	I	E	A	D	L	M
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	L	G	S	K	V	T	V	V	E	F	Q	P	Q	I	G	A	S	M	D	G	E	V	A	K	A	T	Q	K	F	L	K	K	Q	G	L	D	F	K	L	S	T	K	V	I	S	A	K	R	N	D	D	K	N	V	V	E	I	V	V	E	D	T	K	T	N	K	Q	E	N	L	E	A	E	V	L
Template Known Secondary structure		.	.	.	.	.	T	T								S	S	S	S	S	S	S	S	S															T	T					T	T										T	T	T	T									T	T	T	T								S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		V	W	A	A	G	I	K	A	P	D	F	.	.	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q
Query Conservation													.	.
Alig confidence													.	.																								.														.	.	.	.	.	.	.	.
Template Conservation																																						.														.	.	.	.	.	.	.	.
Template Sequence		L	V	A	V	G	R	R	P	Y	I	A	G	L	G	A	E	K	I	G	L	E	V	D	K	R	G	R	L	V	I	D	D	Q	F	N	S	.	K	F	P	H	I	K	V	V	G	D	V	T	F	.	.	.	.	.	.	.	.	G	P	M	L	A	H	K	A	E	E	E	G	I	A	A	V	E	M	L	K	T	G
Template Known Secondary structure					S							T	T	S						T			B		T	T	S		B				T	T	S	B		.	S	S	T	T					G	G	G	S	S	.	.	.	.	.	.	.	.	S																					S
Template Predicted Secondary structure																																						.														.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.									.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		349	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		M	N	G	.	.	K	P	L	K	N	Y	Q	Y	K	D	H	G	S	L	V	S	L	S	N	F	S
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		H	G	H	V	N	Y	N	N	I	P	S	V	M	Y	S	H	P	E	V	A	W	V	G	K	T	E
Template Known Secondary structure							T	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions