Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 30 Aligned Residues 304 % Identity 26% Template c1lvlA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution Resolution 2.45 Å

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		3	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure						.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	L	K	.	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																							.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		Q	T	I	Q	T	T	L	L	I	I	G	G	G	P	G	G	Y	V	A	A	I	R	A	G	Q	L	G	.	.	.	.	.	I	P	T	V	L	V	E	G	Q	A	L	G	G	T	C	L	N	I	G	C	I	P	S	K	A	L	I	H	V	A	E	Q	F	H	Q	A	S	R	F	T	E	P	S	P	L	G	I	S
Template Known Secondary structure							S							S														T	.	.	.	.	.								S	S		T	T							S																				T	T	S			T	T
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
																											68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	S	P	R	L	D	I	G	Q	S	V	A	W	K	D	G	I	V	D	R	L	T	T	G	V	A	A	L	L	K	K	H	G	V	K	V	V	H	G	W	A	K	V	L	D	G	K	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	D	G	Q	R	I	Q	C	E	H	L	L	L	A	T
Template Known Secondary structure																																		T	T						S							T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T						S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.															.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	S	S	V	E	L	P	M	L	P	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	V	I	S	S	T	E	A	L	A	P	K	A	L	P	Q	H	L	V	V	V	G	G	G	Y	I	G	L	E	L	G	I	A	Y	R	K	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								B	T	T	B			B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								T			S	S			S								S														.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.																				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	T	K	.	.	.	.	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A
Query Conservation																																																												.	.	.	.
Alig confidence		.	.	.	.	.																																																						.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	G	A	Q	V	S	V	V	E	A	R	E	R	I	L	P	T	Y	D	S	E	L	T	A	P	V	A	E	S	L	K	K	L	G	I	A	L	H	L	G	H	S	V	E	G	Y	E	N	G	C	L	L	A	N	D	G	K	G	G	Q	L	R	L	E	A	D	R	V	L	V	A	V	G	R	R	P
Template Known Secondary structure		.	.	.	.	.	T								S	S	S	S	S	S	T	T	S																T					T	T								T	T							S	S	S								S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		P	D	F	L	K	D	I	G	G	L	E	T	.	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	K	N	Y
Query Conservation														.
Alig confidence														.															.														.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation																													.														.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Sequence		R	T	K	G	F	N	L	E	C	L	D	L	K	M	N	G	A	A	I	A	I	D	E	R	C	Q	T	.	S	M	H	N	V	W	A	I	G	D	V	A	G	.	.	.	.	.	.	.	.	E	P	M	L	A	H	R	A	M	A	Q	G	E	M	V	A	E	I	I	A	.	.	.	.	.	G	K	A	R	R	F
Template Known Secondary structure				S	S	S	S	G	G	G	S						T	T						T	T		B		.	S	S	T	T					G	G	G	G		.	.	.	.	.	.	.	.	S	S																		T	.	.	.	.	.	T
Template Predicted Secondary structure																													.														.	.	.	.	.	.	.	.																					.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.									.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.						.	330	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	K	D	H	G	S	L	V	S	L	S	N	F	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	A	A	I	A	A	V	C	F	T	D	P	E	V	V
Template Known Secondary structure				S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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