Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 60 Aligned Residues 310 % Identity 21% Template c1lpfB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		S	Q	K	F	D	V	V	V	I	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	.	.	.	.	.	L	K	T	A	C	I	E	K	Y	I	G	K	E	G	K	V	A	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	D	S	S	Y	K	Y	H	E	A	K	E	A	F	K	V
Template Known Secondary structure													S														T	.	.	.	.	.										B		S	S	S	S	B		T	T							S																				T	S	G	G
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
																						59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.
Template Sequence		H	G	I	E	A	K	G	V	T	I	D	V	P	A	M	V	A	R	K	A	N	I	V	K	N	L	T	G	G	I	A	T	L	F	K	A	N	G	V	T	S	F	E	G	H	G	K	L	L	A	N	K	Q	V	E	V	T	G	L	.	.	.	.	.	.	.	.	.	D	G	K	T	Q	V	L	E	A	E	N	V
Template Known Secondary structure		G	T				S	S																															T												G	G	G							T	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.										.	.	.	.	.	140	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence		I	I	A	S	G	S	R	P	V	E	I	P	P	A	P	L	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	I	V	D	S	T	G	A	L	E	F	Q	A	V	P	K	K	L	G	V	I	G	A	G	V	I	G	L	E	L	G	S	V	W	A	R	L	.	.	.	.	.	.
Template Known Secondary structure												B	T	T	B				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								T	T		S	S			S								S													T	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.								.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	.	.	.	.	.	.	.	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	G	A	E	V	T	V	L	E	A	L	D	K	F	L	P	A	A	D	E	Q	I	A	K	E	A	L	K	V	L	T	K	Q	G	L	N	I	R	L	G	A	R	V	T	A	S	E	V	K	K	K	Q	V	T	V	T	F	T	D	A	N	G	E	Q	K	E	T	F	D	K	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T								S	S	S	S	S	S	T	T	S															T	T					T	T										T	T									S	S								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	.	.	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M
Query Conservation																					.	.
Alig confidence																					.	.															.														.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																																					.														.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		V	A	V	G	R	R	P	V	T	T	D	L	L	A	A	D	S	G	V	T	L	D	E	R	G	F	I	Y	V	D	D	H	C	K	T	.	S	V	P	G	V	F	A	I	G	D	V	V	R	.	.	.	.	.	.	.	.	G	A	M	L	A	H	K	A	S	E	E	G	V	M	V	A	E	R	I	A	.	.	.
Template Known Secondary structure				S							T	T	T	B		T	T	S				B		T	T	S		B				T	T		B		.	S	S	T	T					G	G	G	S	S	.	.	.	.	.	.	.	.	S																			T	.	.	.
Template Predicted Secondary structure																																					.														.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.									.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	K	P	L	K	N	Y	Q	Y	K	D	H	G	S	L	V	S	L	S	N	F	S	T
Query Conservation
Alig confidence		.				.
Template Conservation		.				.
Template Sequence		.	G	H	K	.	A	Q	M	N	Y	D	L	I	P	S	V	I	Y	T	H	P	E	I	A
Template Known Secondary structure		.	T			.					G	G	G							S	S	S
Template Predicted Secondary structure		.				.
Template SS confidence
			342	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions