Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 28 Aligned Residues 293 % Identity 18% Template c1hyuA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f; PDBTitle: crystal structure of intact ahpf Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.															.
Query SS confidence																																											.	.															.
Query Sequence		T	T	P	L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	.	.	H	S	H	L	W	K	P	L	L	H	E	V	A	T	.	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q
Query Conservation																																											.	.															.
Alig confidence																													.	.	.	.	.										.	.															.
Template Conservation																													.	.	.	.	.
Template Sequence		K	R	D	A	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	V	Y	S	A	R	K	G	.	.	.	.	.	I	R	T	G	L	M	G	E	R	F	G	G	Q	V	L	D	T	V	D	I	E	N	Y	I	S	V	P	K	T	E	G	Q	K	L	A	G	A	L	K	A	H	V	S	D	Y	D	V	D
Template Known Secondary structure		T	S											S													T	T	.	.	.	.	.								S	S	T	T	G	G	G	T	T		S		B			B	T	T	B	S	S	B															T	S
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.						.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		79	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		F	Q	L	G	.	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L
Query Conservation						.
Alig confidence						.											.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	D	S	Q	S	A	S	K	L	V	P	A	A	T	.	.	.	.	.	.	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	I	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	K	G	V
Template Known Secondary structure					S										S	S	.	.	.	.	.	.	T	T	S							T	T	S																						T	T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.							.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																.	.	340	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Sequence		T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	.	.	.	.	.	Q	V	L	Q	D	K	V	R	S
Template Known Secondary structure					T	T			G	G	G	G	B	T	S								S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	S							S	S	S	S			S		.	.	.	.	.								T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.																.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.											.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	.	.	.	.	.	.	.	.	.	.	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D
Query Conservation																					.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.																													.																				.
Template Conservation																																																											.																				.
Template Sequence		L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	S	V	A	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	H	W	L	E	.	G	A	L	E	R	N	R	M	G	E	I	I	I	D	A	K	C	E	T	.	S	V
Template Known Secondary structure			T	T						S										S	S	S									T	T	T									S											S		G	G	G	T	.	T	T	S		B		T	T	S		B				T	T		B		.	S	S
Template Predicted Secondary structure																																																											.																				.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.		.	480
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M
Query Conservation
Alig confidence																	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		K	G	V	F	A	A	G	D	C	T	T	V	P	Y	K	.	.	.	.	.	.	.	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A	F	D	Y	L
Template Known Secondary structure		T	T					S	T	T	B			S	S		.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.								.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions