Phyre 2 alignment of P00393 with c1gthD

Job Description P00393
Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012

Rank 36 Aligned Residues 312

% Identity 15% Template c1gthD_

PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil

Resolution 2.25 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	P	L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G
Query Conservation
Alig confidence																													.	.	.	.														.	.
Template Conservation																													.	.	.	.														.	.
Template Sequence	A	Y	S	A	K	I	A	L	L	G	A	G	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	.	.	.	.	D	I	T	I	F	E	K	Q	E	Y	V	G	G	.	.	L	S	T	S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K	I	I	C	G
Template Known Secondary structure	G	G	G									S														T			.	.	.	.							S	S	S	S		S	T	.	.					T	S		T	T	T	S														T	T	T						S
Template Predicted Secondary structure																													.	.	.	.														.	.
Template SS confidence
	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

	83	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure						.																																						.
Query SS confidence						.																																						.
Query Sequence	S	V	I	D	I	.	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	.	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K
Query Conservation						.																																						.
Alig confidence						.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	S	L	S	E	N	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	N	T	L	K	E	E	G	Y	K	A	A	F	I	G	I	G	L	P	E	P	K	T	D	D	I	F	Q	G	L	T	Q	D	Q	G	F	Y	T	S	K	D	F	L	P	L	V	A	K	S	S	K	A	G	M	C
Template Known Secondary structure			B	S	T	T	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T																	G	G	G	T	T			T	T	T	T																	T	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	259	260	.	.	.	.	.	.																	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence	A	C	H	S	P	L	P	S	I	R	G	A	V	I	V	L	G	A	G	D	T	A	F	D	C	A	T	S	A	L	R	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	R	V	F	L	V	F	R	K	G	F	V	N	I	R	A	V	P	E	E	.	.	.	.	V	E	L	A	K	E	E	K
Template Known Secondary structure	S	S									S								S													T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S							S	S		G	G	G			S					.	.	.	.							T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
	323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.															.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.					.	.	.	380	.	.	.	.

	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260																					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	L	H	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	.	.	G	G	L	E	T	N	R	I	N	Q	L	V	V
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence	C	E	F	L	P	F	L	S	P	R	K	V	I	V	K	G	G	R	I	V	A	V	Q	F	V	R	T	E	Q	D	E	T	G	K	W	N	E	D	E	D	Q	I	V	H	L	K	A	D	V	V	I	S	A	F	G	S	V	L	R	D	P	K	V	K	E	A	L	S	P	I	K	F	N	R	W	D	L	P	E	V
Template Known Secondary structure						S										S	S	S													S	S	S															S																		T	T	T	T	S		B		T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
	385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

	299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	K	N	Y	Q	Y	K	D	H
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence	D	P	E	T	M	Q	T	S	E	P	W	V	F	A	G	G	D	I	V	G	.	.	.	.	.	.	.	.	M	A	N	T	T	V	E	S	V	N	D	G	K	Q	A	S	W	Y	I	H	K	Y	I	Q	A	Q	Y	G	A	S	V	S	A	K	P	E
Template Known Secondary structure		T	T	T		B		S	S	T	T					G	G	G	G	T	.	.	.	.	.	.	.	.				S																							T	T					S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
	465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.									.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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