Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 3 Aligned Residues 376 % Identity 17% Template c1fcdB_ PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution Resolution 2.53 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	V	I
Query Conservation
Alig confidence																								.	.	.																																												.
Template Conservation																								.	.	.																																												.
Template Sequence		R	K	V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	.	.	.	D	P	S	I	E	V	T	L	I	E	P	N	T	D	Y	Y	T	C	Y	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H	G	Y	D	G	L	R	A	.	H	G	I	Q	V	V	H	D	S	A	T
Template Known Secondary structure										S	T	T										T	T	.	.	.		T	T	S							S		S	S				S	T	T	T						T	S	S		G	G	G	G				S						.	T	T						S
Template Predicted Secondary structure																								.	.	.																																												.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140						.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S	T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	.	.	.	.	.	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K
Query Conservation																																																									.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.																		.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.
Template Sequence		G	I	D	P	D	K	K	L	V	K	.	.	.	.	.	.	.	.	.	.	.	T	A	G	G	A	E	F	G	Y	D	R	C	V	V	A	P	G	I	E	L	I	Y	D	K	I	E	G	Y	S	E	E	A	A	A	K	L	P	H	A	W	K	A	G	E	Q	T	A	I	L	R	K	Q	L	E	D	M	.	.	.
Template Known Secondary structure						T	T	T				.	.	.	.	.	.	.	.	.	.	.			T	S						S													T	T	S	T	T			T	T	G	G	G	T	S					S														S	S	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.												.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L	T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	.	.	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K
Query Conservation																																																														.	.
Alig confidence		.																																				.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.																																				.	.	.	.	.	.	.	.	.
Template Sequence		.	A	D	G	G	T	V	V	I	A	P	P	A	A	P	F	R	C	P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	.	.	.	.	.	.	.	.	.	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G	W	E	R	L	Y	G	F	G	T	E	N
Template Known Secondary structure		.		T	T										S	S		B		T	T																	.	.	.	.	.	.	.	.	.		T	T								S		S	S		T	T														T	T	T	T	T
Template Predicted Secondary structure		.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
			145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.										180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																				.	.	.	.																																														.
Query SS confidence																				.	.	.	.																																														.
Query Sequence		L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	.	.	.	.	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G	I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	N	R	I	N	Q	L	V	V	E	P	T	.	L	Q	T	T	R	D	P	D	I	Y	A	I
Query Conservation																				.	.	.	.																																														.
Alig confidence																				.	.	.	.																															.	.														.
Template Conservation																																																						.	.
Template Sequence		A	M	I	E	W	H	P	G	P	D	S	A	V	V	K	V	D	G	G	E	M	M	V	E	T	A	F	G	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	K	I	A	Q	I	A	G	.	.	L	T	N	D	A	G	W	C	P	V	D	I	K	T	F	E	S	S	I	H	K	G	I	H	V	I
Template Known Secondary structure			S						T	T	T	T				S				T	T	T					T	T							S																		T	.	.			B	T	T	T	B	B		B		S	S	S		B	B	S	S	S	T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																						.																						.	.	.	.	.	.
Query SS confidence																																																						.																						.	.	.	.	.	.
Query Sequence		G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P	L	K	N	Y	Q	Y	K	D	H	G	S	L	.	V	S	L	S	N	F	S	T	V	G	S	L	M	G	N	L	T	R	G	S	M	.	.	.	.	.	.
Query Conservation																																																						.																						.	.	.	.	.	.
Alig confidence							.	.	.	.	.																																											.																						.	.	.	.	.	.
Template Conservation							.	.	.	.	.
Template Sequence		G	D	A	S	I	.	.	.	.	.	A	N	P	M	P	K	S	G	Y	S	A	N	S	Q	G	K	V	A	A	A	A	V	V	V	L	L	K	G	E	E	P	G	T	P	S	Y	L	N	T	C	Y	S	I	L	A	P	A	Y	G	I	S	V	A	A	I	Y	R	P	N	A	D	G	S	A	I	E	S	V	P	D
Template Known Secondary structure		G	G	G	B		.	.	.	.	.		S	S	S		B	S																				T	T								B			B							T	T													T	T	T	T						S	S
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		293	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
				387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.
Predicted Secondary structure		.	.																							.
Query SS confidence		.	.																							.
Query Sequence		.	.	M	I	E	G	R	I	A	R	F	V	Y	I	S	L	Y	R	M	H	Q	I	A	L	.	H	G	Y	F	K	T	G	L
Query Conservation		.	.																							.
Alig confidence		.	.																							.
Template Conservation
Template Sequence		S	G	G	V	T	P	V	D	A	P	D	W	V	L	E	R	E	V	Q	Y	A	Y	S	W	Y	N	N	I	V	H	D	T	F
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400