Job Description P00393 Confidence 100.00% Date Thu Jan 5 10:56:36 GMT 2012 Rank 33 Aligned Residues 310 % Identity 20% Template c1dxlC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum Resolution 3.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	L	K	K	I	V	I	V	G	G	G	A	G	G	L	E	M	A	T	Q	L	G	H	K	L	G	R	K	K	K	A	K	I	T	L	V	D	R	N	H	S	H	L	W	K	P	L	L	H	E	V	A	T	G	S	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		S	D	E	N	D	V	V	I	I	G	G	G	P	G	G	Y	V	A	A	I	K	A	A	Q	L	G	.	.	.	.	.	F	K	T	T	C	I	E	K	R	G	A	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	H	S	S	H	M	Y	H	E	A	K	H	S	F	A	N	H	G	V	K	V	S
Template Known Secondary structure				B		S							S														T	.	.	.	.	.									S	S	S	S	S							S																				T									S
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
																		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	V	D	A	L	S	Y	L	A	H	A	R	N	H	G	F	Q	F	Q	L	G	S	V	I	D	I	D	R	E	A	K	T	I	T	I	A	E	L	R	D	E	K	G	E	L	L	V	P	E	R	K	I	A	Y	D	T	L	V	M	A	L	G	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.
Template Sequence		N	V	E	I	D	L	A	A	M	M	G	Q	K	D	K	A	V	S	N	L	T	R	G	I	E	G	L	F	K	K	N	K	V	T	Y	V	K	G	Y	G	K	F	V	S	P	S	E	I	S	V	D	T	I	.	.	.	.	.	.	.	.	.	E	G	E	N	T	V	V	K	G	K	H	I	I	I	A	T	G	S
Template Known Secondary structure																																	T						S					S	S	S	S						B	T	.	.	.	.	.	.	.	.	.	T	T	B							S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	N	D	F	N	T	P	G	V	K	E	N	C	I	F	L	D	N	P	H	Q	A	R	R	F	H	Q	E	M	L	N	L	F	L	K	Y	S	A	N	L	G	A	N	G	K	V	N	I	A	I	V	G	G	G	A	T	G	V	E	L	S	A	E	L	H	N	A	V	K	Q	L	H	S	Y	G	Y	K	G	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	K	S	L	P	G	V	T	I	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	I	V	S	S	T	G	A	L	A	L	S	E	I	P	K	K	L	V	V	I	G	A	G	Y	I	G	L	E	M	G	S	V	W	G	R	I	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S	S				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S									T		S	S			S					S	S		S														.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.																			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.										.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.
Query Sequence		T	N	E	A	L	N	V	T	L	V	E	A	G	E	R	I	L	P	A	L	P	P	R	I	S	A	A	A	H	N	E	L	T	K	L	G	V	R	V	L	T	Q	T	M	V	T	S	A	D	E	G	G	.	.	.	.	.	.	.	.	.	L	H	T	K	D	G	E	Y	I	E	A	D	L	M	V	W	A	A	G
Query Conservation																																																						.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																		.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	G	S	E	V	T	V	V	E	F	A	S	E	I	V	P	T	M	D	A	E	I	R	K	Q	F	Q	R	S	L	E	K	Q	G	M	K	F	K	L	K	T	K	V	V	G	V	D	T	S	G	D	G	V	K	L	T	V	E	P	S	A	G	G	E	Q	T	I	I	E	A	D	V	V	L	V	S	A	G
Template Known Secondary structure		.	.	.	T								S	S	S	S	S	S	S	S	S														T	T	S					T	T							B		S	S	S	S		B			B			S	S	S	S			B					S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		I	K	A	P	D	F	L	K	D	I	G	G	L	E	T	.	.	N	R	I	N	Q	L	V	V	E	P	T	L	Q	T	T	R	D	P	D	I	Y	A	I	G	D	C	A	S	C	P	R	P	E	G	G	F	V	P	P	R	A	Q	A	A	H	Q	M	A	T	C	A	M	N	N	I	L	A	Q	M	N	G	K	P
Query Conservation																	.	.
Alig confidence																	.	.															.														.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation																																	.														.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Sequence		R	T	P	F	T	S	G	L	N	L	D	K	I	G	V	E	T	D	K	L	G	R	I	L	V	N	E	R	F	S	T	.	N	V	S	G	V	Y	A	I	G	D	V	I	P	.	.	.	.	.	.	.	.	G	P	M	L	A	H	K	A	E	E	D	G	V	A	C	V	E	Y	L	A	.	.	.	.	.	G	K
Template Known Secondary structure							T	T				T	T	T						T	T	S						T	T	S	B		.	S	S	T	T					S	T	T	S	S	.	.	.	.	.	.	.	.	S																				.	.	.	.	.	T	S
Template Predicted Secondary structure																																	.														.	.	.	.	.	.	.	.																					.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320									.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340						.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	N	Y	Q	Y	K	D	H	G	S	L	V	S	L	S	N	F	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	H	V	D	Y	D	K	V	P	G	V	V	Y	T	N	P	E	V	A
Template Known Secondary structure							T	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions